RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CPA4Q9UI42 421 aa24.36■■□□□ 1.49
VPS53-210ENST00000571456 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.36■■□□□ 1.49
VPS53-210ENST00000571456 MYPNQ86TC9 1320 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 ALPK3Q96L96 1907 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 GH2P01242 217 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 SLURP2P0DP57 97 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 RASA1P20936 1047 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 PTH1RQ03431 593 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 SLC44A5Q8NCS7 719 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 KCNH4Q9UQ05 1017 aa24.35■■□□□ 1.49
VPS53-210ENST00000571456 PLIN4Q96Q06 1357 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 GREB1LQ9C091 1923 aaPredicted RBP24.34■■□□□ 1.49
VPS53-210ENST00000571456 IRF6O14896 467 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 GDF11O95390 407 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 SGPL1O95470 568 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 RRP1BQ14684 758 aaKnown RBP24.34■■□□□ 1.49
VPS53-210ENST00000571456 KANSL2Q9H9L4 492 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 RBM8AQ9Y5S9 174 aaKnown RBP24.34■■□□□ 1.49
VPS53-210ENST00000571456 ZHX2Q9Y6X8 837 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 MGAMO43451 1857 aa24.34■■□□□ 1.49
VPS53-210ENST00000571456 MPHOSPH10O00566 681 aaKnown RBP24.33■■□□□ 1.49
VPS53-210ENST00000571456 EVX2Q03828 476 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 CTDSPL2Q05D32 466 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 ZNF280CQ8ND82 737 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 KRT23Q9C075 422 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 UNC93B1Q9H1C4 597 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 SH2D4AQ9H788 454 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 AFG3L2Q9Y4W6 797 aa24.33■■□□□ 1.49
VPS53-210ENST00000571456 PTPRFP10586 1907 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 C19orf81C9J6K1 198 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 TSPY3P0CV98 308 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 TSPY8P0CW00 308 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 BMP8BP34820 402 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 Q7L0L9 218 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 NEDD1Q8NHV4 660 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 SYNPO2Q9UMS6 1093 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 VCANP13611 3396 aa24.32■■□□□ 1.48
VPS53-210ENST00000571456 HAND2P61296 217 aa24.31■■□□□ 1.48
VPS53-210ENST00000571456 TRDNQ13061 729 aa24.31■■□□□ 1.48
VPS53-210ENST00000571456 CCDC178Q5BJE1 867 aa24.31■■□□□ 1.48
VPS53-210ENST00000571456 ESR2Q92731 530 aa24.31■■□□□ 1.48
VPS53-210ENST00000571456 TSPY2A6NKD2 308 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 SMIM22K7EJ46 135 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 CYP21A2P08686 494 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 AKR1B1P15121 316 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 CAPN2P17655 700 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 USP14P54578 494 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 RAB3GAP1Q15042 981 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 NECTIN1Q15223 517 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 FASTKD5Q7L8L6 764 aaKnown RBP24.3■■□□□ 1.48
VPS53-210ENST00000571456 SLAIN1Q8ND83 568 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 GDF15Q99988 308 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 ARHGEF10LQ9HCE6 1279 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 MTMR10Q9NXD2 777 aa24.3■■□□□ 1.48
VPS53-210ENST00000571456 USP17L10C9JJH3 530 aa24.29■■□□□ 1.48
VPS53-210ENST00000571456 PRKCZQ05513 592 aa24.29■■□□□ 1.48
VPS53-210ENST00000571456 TOMM22Q9NS69 142 aa24.29■■□□□ 1.48
VPS53-210ENST00000571456 ADGRA2Q96PE1 1338 aa24.29■■□□□ 1.48
VPS53-210ENST00000571456 A0A0G2JLL6 359 aaPredicted RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 RANBP6O60518 1105 aaKnown RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 PRDM1O75626 825 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 TFRCP02786 760 aaKnown RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 ZKSCAN1P17029 563 aaPredicted RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 BACE1P56817 501 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 TFAP4Q01664 338 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 ICA1Q05084 483 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 SEPT2Q15019 361 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 SH3D19Q5HYK7 790 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 PRRT2Q7Z6L0 340 aaPredicted RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 ANKRD23Q86SG2 305 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 TBC1D10CQ8IV04 446 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 PROCA1Q8NCQ7 364 aaPredicted RBP24.28■■□□□ 1.48
VPS53-210ENST00000571456 NBPF3Q9H094 633 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 TCP11L1Q9NUJ3 509 aa24.28■■□□□ 1.48
VPS53-210ENST00000571456 PDHXO00330 501 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 GUCY1A2P33402 732 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 JAG1P78504 1218 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 SPP2Q13103 211 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 KRT32Q14532 448 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 TSGA10IPQ3SY00 556 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 STK11IPQ8N1F8 1099 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 KIAA1683Q9H0B3 1180 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 NYAP2Q9P242 653 aa24.27■■□□□ 1.48
VPS53-210ENST00000571456 IGKV6D-41A0A0C4DH26 115 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 MCCP23508 829 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 FCGRTP55899 365 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 LRIT3Q3SXY7 679 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 CREB3L3Q68CJ9 461 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 IQCA1Q86XH1 822 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 NCOA7Q8NI08 942 aa24.26■■□□□ 1.47
VPS53-210ENST00000571456 LOC285556D6RIA3 1793 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 TRIM75PA6NK02 468 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 SLC27A2O14975 620 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 TTLL1O95922 423 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 PABPC4Q13310 644 aaKnown RBP eCLIP24.25■■□□□ 1.47
VPS53-210ENST00000571456 RRP12Q5JTH9 1297 aaKnown RBP24.25■■□□□ 1.47
VPS53-210ENST00000571456 USP17L2Q6R6M4 530 aa24.25■■□□□ 1.47
VPS53-210ENST00000571456 RALYLQ86SE5 291 aaKnown RBP24.25■■□□□ 1.47
VPS53-210ENST00000571456 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.25■■□□□ 1.47
VPS53-210ENST00000571456 C12orf42Q96LP6 360 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms