RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 CHL1O00533 1208 aa8.82□□□□□ -1
CHD3-213ENST00000571249 SEPT4O43236 478 aa8.82□□□□□ -1
CHD3-213ENST00000571249 IGKV5-2P06315 115 aa8.82□□□□□ -1
CHD3-213ENST00000571249 HOXB7P09629 217 aa8.82□□□□□ -1
CHD3-213ENST00000571249 TAP1Q03518 808 aa8.82□□□□□ -1
CHD3-213ENST00000571249 PABPC4Q13310 644 aaKnown RBP eCLIP8.82□□□□□ -1
CHD3-213ENST00000571249 E2F4Q16254 413 aa8.82□□□□□ -1
CHD3-213ENST00000571249 BMP8AQ7Z5Y6 402 aa8.82□□□□□ -1
CHD3-213ENST00000571249 ZNF280CQ8ND82 737 aa8.82□□□□□ -1
CHD3-213ENST00000571249 MRIQ9BWK5 157 aa8.82□□□□□ -1
CHD3-213ENST00000571249 CWC22Q9HCG8 908 aaKnown RBP8.82□□□□□ -1
CHD3-213ENST00000571249 GCN1Q92616 2671 aaKnown RBP8.81□□□□□ -1
CHD3-213ENST00000571249 ANKRD18BA2A2Z9 1011 aa8.81□□□□□ -1
CHD3-213ENST00000571249 TMEM221A6NGB7 291 aa8.81□□□□□ -1
CHD3-213ENST00000571249 M0R296 226 aa8.81□□□□□ -1
CHD3-213ENST00000571249 SEMA3EO15041 775 aa8.81□□□□□ -1
CHD3-213ENST00000571249 PTPREP23469 700 aa8.81□□□□□ -1
CHD3-213ENST00000571249 MAP3K10Q02779 954 aa8.81□□□□□ -1
CHD3-213ENST00000571249 TMEM67Q5HYA8 995 aa8.81□□□□□ -1
CHD3-213ENST00000571249 WDR78Q5VTH9 848 aa8.81□□□□□ -1
CHD3-213ENST00000571249 UBE3BQ7Z3V4 1068 aa8.81□□□□□ -1
CHD3-213ENST00000571249 EDAQ92838 391 aa8.81□□□□□ -1
CHD3-213ENST00000571249 ARID3AQ99856 593 aa8.81□□□□□ -1
CHD3-213ENST00000571249 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.81□□□□□ -1
CHD3-213ENST00000571249 SLC4A7Q9Y6M7 1214 aa8.81□□□□□ -1
CHD3-213ENST00000571249 UMODL1Q5DID0 1318 aa8.8□□□□□ -1
CHD3-213ENST00000571249 SMCHD1A6NHR9 2005 aa8.8□□□□□ -1
CHD3-213ENST00000571249 DDTLA6NHG4 134 aaPredicted RBP8.8□□□□□ -1
CHD3-213ENST00000571249 SLC15A5A6NIM6 579 aa8.8□□□□□ -1
CHD3-213ENST00000571249 FAM196BA6NMK8 535 aa8.8□□□□□ -1
CHD3-213ENST00000571249 H7C1W4 665 aa8.8□□□□□ -1
CHD3-213ENST00000571249 CNMDO75829 334 aa8.8□□□□□ -1
CHD3-213ENST00000571249 CSF1RP07333 972 aa8.8□□□□□ -1
CHD3-213ENST00000571249 HOXC6P09630 235 aa8.8□□□□□ -1
CHD3-213ENST00000571249 ATP2A2P16615 1042 aaKnown RBP8.8□□□□□ -1
CHD3-213ENST00000571249 RRP1BQ14684 758 aaKnown RBP8.8□□□□□ -1
CHD3-213ENST00000571249 DIXDC1Q155Q3 683 aa8.8□□□□□ -1
CHD3-213ENST00000571249 CWF19L2Q2TBE0 894 aaKnown RBP8.8□□□□□ -1
CHD3-213ENST00000571249 HERC4Q5GLZ8 1057 aaPredicted RBP8.8□□□□□ -1
CHD3-213ENST00000571249 DUSP27Q5VZP5 1158 aa8.8□□□□□ -1
CHD3-213ENST00000571249 HHIPL2Q6UWX4 724 aa8.8□□□□□ -1
CHD3-213ENST00000571249 TRIM67Q6ZTA4 783 aa8.8□□□□□ -1
CHD3-213ENST00000571249 SUGP1Q8IWZ8 645 aaKnown RBP8.8□□□□□ -1
CHD3-213ENST00000571249 FBXL6Q8N531 539 aa8.8□□□□□ -1
CHD3-213ENST00000571249 VWCEQ96DN2 955 aa8.8□□□□□ -1
CHD3-213ENST00000571249 ZNF594Q96JF6 807 aaPredicted RBP8.8□□□□□ -1
CHD3-213ENST00000571249 XPNPEP3Q9NQH7 507 aa8.8□□□□□ -1
CHD3-213ENST00000571249 USP40Q9NVE5 1235 aa8.8□□□□□ -1
CHD3-213ENST00000571249 MAP3K2Q9Y2U5 619 aa8.8□□□□□ -1
CHD3-213ENST00000571249 ZNF536O15090 1300 aa8.8□□□□□ -1
CHD3-213ENST00000571249 ZBBXA8MT70 800 aa8.79□□□□□ -1
CHD3-213ENST00000571249 DDX58O95786 925 aaKnown RBP8.79□□□□□ -1
CHD3-213ENST00000571249 HOXA7P31268 230 aaPredicted RBP8.79□□□□□ -1
CHD3-213ENST00000571249 SH3D19Q5HYK7 790 aa8.79□□□□□ -1
CHD3-213ENST00000571249 RNF135Q8IUD6 432 aa8.79□□□□□ -1
CHD3-213ENST00000571249 GDPD5Q8WTR4 605 aa8.79□□□□□ -1
CHD3-213ENST00000571249 LENG1Q96BZ8 264 aaPredicted RBP8.79□□□□□ -1
CHD3-213ENST00000571249 PLA2G12BQ9BX93 195 aa8.79□□□□□ -1
CHD3-213ENST00000571249 MTIF3Q9H2K0 278 aaKnown RBP8.79□□□□□ -1
CHD3-213ENST00000571249 STARD7Q9NQZ5 370 aa8.79□□□□□ -1
CHD3-213ENST00000571249 LOC285556D6RIA3 1793 aa8.78□□□□□ -1
CHD3-213ENST00000571249 AVPR2P30518 371 aa8.78□□□□□ -1
CHD3-213ENST00000571249 RGS3P49796 1198 aa8.78□□□□□ -1
CHD3-213ENST00000571249 MTMR2Q13614 643 aa8.78□□□□□ -1
CHD3-213ENST00000571249 GRB14Q14449 540 aa8.78□□□□□ -1
CHD3-213ENST00000571249 FRMD5Q7Z6J6 570 aa8.78□□□□□ -1
CHD3-213ENST00000571249 ZSCAN29Q8IWY8 852 aaPredicted RBP8.78□□□□□ -1
CHD3-213ENST00000571249 NEK9Q8TD19 979 aa8.78□□□□□ -1
CHD3-213ENST00000571249 TBC1D22AQ8WUA7 517 aa8.78□□□□□ -1
CHD3-213ENST00000571249 PNNQ9H307 717 aaKnown RBP8.78□□□□□ -1
CHD3-213ENST00000571249 KMT2EQ8IZD2 1858 aa8.78□□□□□ -1
CHD3-213ENST00000571249 MYH3P11055 1940 aa8.78□□□□□ -1
CHD3-213ENST00000571249 FRYLO94915 3013 aa8.78□□□□□ -1
CHD3-213ENST00000571249 DOCK1Q14185 1865 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 NEURL1BA8MQ27 555 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 FRAT2O75474 233 aaPredicted RBP8.77□□□□□ -1.01
CHD3-213ENST00000571249 NBL1P41271 181 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 CDK7P50613 346 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 ACLYP53396 1101 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 CCL23P55773 120 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 IRX5P78411 483 aaPredicted RBP8.77□□□□□ -1.01
CHD3-213ENST00000571249 LMOD3Q0VAK6 560 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 NEXNQ0ZGT2 675 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 IFIT5Q13325 482 aaKnown RBP8.77□□□□□ -1.01
CHD3-213ENST00000571249 TTLL4Q14679 1199 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 PKN1Q16512 942 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 FBXO33Q7Z6M2 555 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 RNF180Q86T96 592 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 ADHFE1Q8IWW8 467 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 UPF3BQ9BZI7 483 aaKnown RBP8.77□□□□□ -1.01
CHD3-213ENST00000571249 IRF2BPLQ9H1B7 796 aa8.77□□□□□ -1.01
CHD3-213ENST00000571249 ASH1LQ9NR48 2969 aaKnown RBP8.77□□□□□ -1.01
CHD3-213ENST00000571249 PI4KAP2A4QPH2 592 aa8.76□□□□□ -1.01
CHD3-213ENST00000571249 ZNF316A6NFI3 1004 aaPredicted RBP8.76□□□□□ -1.01
CHD3-213ENST00000571249 COBLO75128 1261 aa8.76□□□□□ -1.01
CHD3-213ENST00000571249 GLRX3O76003 335 aaKnown RBP8.76□□□□□ -1.01
CHD3-213ENST00000571249 ZIC2O95409 532 aaPredicted RBP8.76□□□□□ -1.01
CHD3-213ENST00000571249 RARBP10826 455 aa8.76□□□□□ -1.01
CHD3-213ENST00000571249 PYGBP11216 843 aa8.76□□□□□ -1.01
CHD3-213ENST00000571249 DSG3P32926 999 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms