RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 LMCD1Q9NZU5 365 aa6.66□□□□□ -1.34
NUP88-202ENST00000570937 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.66□□□□□ -1.34
NUP88-202ENST00000570937 BAZ1BQ9UIG0 1483 aaKnown RBP6.66□□□□□ -1.34
NUP88-202ENST00000570937 HMGXB3Q12766 1538 aa6.66□□□□□ -1.34
NUP88-202ENST00000570937 RBAK-RBAKDNI3L0D1 243 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 TNFRSF10CO14798 259 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 UBOX5O94941 541 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 SRFP11831 508 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 NME1P15531 152 aaKnown RBP6.65□□□□□ -1.34
NUP88-202ENST00000570937 RAG1P15918 1043 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 GBP1P32455 592 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 TNNI2P48788 182 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 PAK2Q13177 524 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 MCTP1Q6DN14 999 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 SLC23A3Q6PIS1 610 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 DTWD2Q8NBA8 298 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 TGIF2Q9GZN2 237 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.65□□□□□ -1.34
NUP88-202ENST00000570937 PODXL2Q9NZ53 605 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 KCNH3Q9ULD8 1083 aa6.65□□□□□ -1.34
NUP88-202ENST00000570937 MROH2BQ7Z745 1585 aa6.65□□□□□ -1.35
NUP88-202ENST00000570937 PEG3Q9GZU2 1588 aa6.65□□□□□ -1.35
NUP88-202ENST00000570937 H3BS24 57 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 GJA8P48165 433 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 RAD51AP2Q09MP3 1159 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 IKZF1Q13422 519 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 ZNF792Q3KQV3 632 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 C9orf131Q5VYM1 1079 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 INTS3Q68E01 1043 aaKnown RBP6.64□□□□□ -1.35
NUP88-202ENST00000570937 RBBP8NLQ8NC74 664 aaPredicted RBP6.64□□□□□ -1.35
NUP88-202ENST00000570937 DUSP15Q9H1R2 295 aaPredicted RBP6.64□□□□□ -1.35
NUP88-202ENST00000570937 ANTXR1Q9H6X2 564 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 ATP13A1Q9HD20 1204 aa6.64□□□□□ -1.35
NUP88-202ENST00000570937 RNASE1P07998 156 aaKnown RBP6.63□□□□□ -1.35
NUP88-202ENST00000570937 SOX9P48436 509 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 TMPRSS7Q7RTY8 843 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 TAB3Q8N5C8 712 aaPredicted RBP6.63□□□□□ -1.35
NUP88-202ENST00000570937 PI4K2BQ8TCG2 481 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 UBE2FQ969M7 185 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 ZNF428Q96B54 188 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 GPRASP2Q96D09 838 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 TRIT1Q9H3H1 467 aaKnown RBP6.63□□□□□ -1.35
NUP88-202ENST00000570937 MBNL3Q9NUK0 354 aaKnown RBP6.63□□□□□ -1.35
NUP88-202ENST00000570937 ADAMTS6Q9UKP5 1117 aa6.63□□□□□ -1.35
NUP88-202ENST00000570937 LRRN2O75325 713 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 TAL1P17542 331 aaPredicted RBP6.62□□□□□ -1.35
NUP88-202ENST00000570937 ITGB5P18084 799 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 POLR2BP30876 1174 aaKnown RBP6.62□□□□□ -1.35
NUP88-202ENST00000570937 RNF4P78317 190 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 ZP2Q05996 745 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 GAB4Q2WGN9 574 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 ZSWIM5Q9P217 1185 aa6.62□□□□□ -1.35
NUP88-202ENST00000570937 ESR1P03372 595 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 NBPF12Q5TAG4 269 aaPredicted RBP6.61□□□□□ -1.35
NUP88-202ENST00000570937 TSPYL5Q86VY4 417 aaPredicted RBP6.61□□□□□ -1.35
NUP88-202ENST00000570937 FERD3LQ96RJ6 166 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 SLC9A7Q96T83 725 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 TM9SF2Q99805 663 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 GOLGA2P5Q9HBQ8 144 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 GINM1Q9NU53 330 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 GPATCH2Q9NW75 528 aa6.61□□□□□ -1.35
NUP88-202ENST00000570937 RSF1Q96T23 1441 aaPredicted RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 ACRP10323 421 aa6.6□□□□□ -1.35
NUP88-202ENST00000570937 TCF3P15923 654 aa6.6□□□□□ -1.35
NUP88-202ENST00000570937 TPP2P29144 1249 aaPredicted RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 ATG4DQ86TL0 474 aaPredicted RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 ENOX1Q8TC92 643 aaKnown RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 CARS2Q9HA77 564 aaKnown RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 RC3H2Q9HBD1 1191 aaKnown RBP6.6□□□□□ -1.35
NUP88-202ENST00000570937 PPT2Q9UMR5 302 aa6.6□□□□□ -1.35
NUP88-202ENST00000570937 CLEC3AO75596 197 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 JUNBP17275 347 aaPredicted RBP6.59□□□□□ -1.35
NUP88-202ENST00000570937 CHMP4BP1P59074 171 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 NBPF9Q3BBW0 867 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 TMEM192Q8IY95 271 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 LRRN4CLQ8ND94 238 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 ACBD3Q9H3P7 528 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 EFR3BQ9Y2G0 817 aa6.59□□□□□ -1.35
NUP88-202ENST00000570937 WASH4PA8MWX3 477 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 PAX4O43316 350 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 RBM25P49756 843 aaKnown RBP6.58□□□□□ -1.36
NUP88-202ENST00000570937 LSRQ86X29 649 aaPredicted RBP6.58□□□□□ -1.36
NUP88-202ENST00000570937 FLAD1Q8NFF5 587 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 SEC16BQ96JE7 1060 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 CCSER2Q9H7U1 834 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 PRDM7Q9NQW5 492 aa6.58□□□□□ -1.36
NUP88-202ENST00000570937 SHISA3A0PJX4 238 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 BIN1O00499 593 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 PAPLNO95428 1278 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 GUCY2CP25092 1073 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 ERCC5P28715 1186 aaPredicted RBP6.57□□□□□ -1.36
NUP88-202ENST00000570937 CCDC120Q96HB5 630 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 DHRS1Q96LJ7 313 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 SLC6A18Q96N87 628 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 IGSF5Q9NSI5 407 aa6.57□□□□□ -1.36
NUP88-202ENST00000570937 SUCOQ9UBS9 1254 aaKnown RBP6.57□□□□□ -1.36
NUP88-202ENST00000570937 WIZO95785 1651 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 GIPRP48546 466 aa6.56□□□□□ -1.36
NUP88-202ENST00000570937 NMIQ13287 307 aaPredicted RBP6.56□□□□□ -1.36
NUP88-202ENST00000570937 FBXW10Q5XX13 1052 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms