RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
VPS53-207ENST00000570510 MICALL1Q8N3F8 863 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 NUP133Q8WUM0 1156 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 PBX4Q9BYU1 374 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 TANGO6Q9C0B7 1094 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 COPRSQ9NQ92 184 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 PHF24Q9UPV7 400 aa13.58□□□□□ -0.24
VPS53-207ENST00000570510 SPDYE16A6NNV3 312 aaPredicted RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 PGK1P00558 417 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 ERCC3P19447 782 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 COG2Q14746 738 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 RAB30Q15771 203 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 CERKLQ49MI3 558 aaPredicted RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 METTL16Q86W50 562 aaKnown RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 VTI1AQ96AJ9 217 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS53-207ENST00000570510 MOV10L1Q9BXT6 1211 aaKnown RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 KIAA1683Q9H0B3 1180 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 MTIF3Q9H2K0 278 aaKnown RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 SLC28A3Q9HAS3 691 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 STARD7Q9NQZ5 370 aa13.57□□□□□ -0.24
VPS53-207ENST00000570510 ARIH1Q9Y4X5 557 aaPredicted RBP13.57□□□□□ -0.24
VPS53-207ENST00000570510 RLFQ13129 1914 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 A0A1W2PQ45 241 aaPredicted RBP13.56□□□□□ -0.24
VPS53-207ENST00000570510 A0A1W2PQY0 241 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 CCER2I3L3R5 266 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 TIMP1P01033 207 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 UQCRFS1P1P0C7P4 283 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 FCER1AP12319 257 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 PBX2P40425 430 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 USP5P45974 858 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 ABCB5Q2M3G0 1257 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 SAMD1Q6SPF0 538 aaPredicted RBP13.56□□□□□ -0.24
VPS53-207ENST00000570510 TMEM199Q8N511 208 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 TOX2Q96NM4 488 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 NECAB3Q96P71 396 aaPredicted RBP13.56□□□□□ -0.24
VPS53-207ENST00000570510 SPATC1LQ9H0A9 340 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 MROH8Q9H579 483 aa13.56□□□□□ -0.24
VPS53-207ENST00000570510 GRXCR1A8MXD5 290 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 COBLO75128 1261 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 FAAP100Q0VG06 881 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 MFSD5Q6N075 450 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 SHCBP1Q8NEM2 672 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 MAML3Q96JK9 1138 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 CXXC1Q9P0U4 656 aaPredicted RBP13.55□□□□□ -0.24
VPS53-207ENST00000570510 SERPINB13Q9UIV8 391 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 MROH7Q68CQ1 1323 aa13.55□□□□□ -0.24
VPS53-207ENST00000570510 SRGAP3O43295 1099 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 ARID4AP29374 1257 aaPredicted RBP13.54□□□□□ -0.24
VPS53-207ENST00000570510 PPP4CP60510 307 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 TMEM31Q5JXX7 168 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 PSRC1Q6PGN9 363 aaPredicted RBP13.54□□□□□ -0.24
VPS53-207ENST00000570510 ANKRD33Q7Z3H0 272 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 ABRAQ8N0Z2 381 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 MB21D1Q8N884 522 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 ACER1Q8TDN7 264 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 SSH1Q8WYL5 1049 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 SNRKQ9NRH2 765 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 NRBP1Q9UHY1 535 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 CNPY2Q9Y2B0 182 aa13.54□□□□□ -0.24
VPS53-207ENST00000570510 MPHOSPH10O00566 681 aaKnown RBP13.53□□□□□ -0.24
VPS53-207ENST00000570510 IGHA2P01877 340 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 AKR1A1P14550 325 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 MCAMP43121 646 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 ADGRE1Q14246 886 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 CCDC158Q5M9N0 1113 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TTC39AQ5SRH9 613 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TMEM240Q5SV17 173 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TATDN1Q6P1N9 297 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TTC6Q86TZ1 520 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TSEN34Q9BSV6 310 aaKnown RBP13.53□□□□□ -0.24
VPS53-207ENST00000570510 LRFN3Q9BTN0 628 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 SMC4Q9NTJ3 1288 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 SYNGAP1Q96PV0 1343 aa13.53□□□□□ -0.24
VPS53-207ENST00000570510 TLR3O15455 904 aaKnown RBP13.52□□□□□ -0.25
VPS53-207ENST00000570510 FLOT1O75955 427 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 ACRP10323 421 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 BMP1P13497 986 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 CSF2RAP15509 400 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 ACLYP53396 1101 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 G3BP1Q13283 466 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS53-207ENST00000570510 ZNF365Q70YC5 407 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 MMP19Q99542 508 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 NKX2-4Q9H2Z4 354 aa13.52□□□□□ -0.25
VPS53-207ENST00000570510 MOXD2PA6NHM9 499 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 GTPBP6O43824 516 aaPredicted RBP13.51□□□□□ -0.25
VPS53-207ENST00000570510 TFF2Q03403 129 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 KCTD2Q14681 263 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 CERS3Q8IU89 383 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 HERVK_113Q902F9 699 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 TINF2Q9BSI4 451 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 PPP1R12CQ9BZL4 782 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 SPC25Q9HBM1 224 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 NCOR1O75376 2440 aa13.51□□□□□ -0.25
VPS53-207ENST00000570510 SLC25A27O95847 323 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 FGBP02675 491 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 POLR3DP05423 398 aaPredicted RBP13.5□□□□□ -0.25
VPS53-207ENST00000570510 PGK2P07205 417 aa13.5□□□□□ -0.25
VPS53-207ENST00000570510 CYP7A1P22680 504 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms