RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SLC7A5Q01650 507 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 ROR2Q01974 943 aaKnown RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 SF3B2Q13435 895 aaKnown RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 ME3Q16798 604 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 CREB3L3Q68CJ9 461 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 TRIM58Q8NG06 486 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 XAGE2Q96GT9 111 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 PNKPQ96T60 521 aa12.17□□□□□ -0.46
CLK3-226ENST00000569406 RBM8AQ9Y5S9 174 aaKnown RBP12.17□□□□□ -0.46
CLK3-226ENST00000569406 LRRIQ3A6PVS8 624 aaPredicted RBP12.16□□□□□ -0.46
CLK3-226ENST00000569406 SLC27A2O14975 620 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 CCDC13Q8IYE1 715 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 GDAP1L1Q96MZ0 367 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 TRIM7Q9C029 511 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 MYO1AQ9UBC5 1043 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 TPX2Q9ULW0 747 aaKnown RBP12.16□□□□□ -0.46
CLK3-226ENST00000569406 ERVV-2B6SEH9 535 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 ATP5JP18859 108 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 CYB5D1Q6P9G0 228 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 RUFY1Q96T51 708 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 CAPS2Q9BXY5 557 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 AATFQ9NY61 560 aaKnown RBP eCLIP12.16□□□□□ -0.46
CLK3-226ENST00000569406 LIMCH1Q9UPQ0 1083 aa12.16□□□□□ -0.46
CLK3-226ENST00000569406 DISP2A7MBM2 1401 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 OPA1O60313 960 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 TAF5LO75529 589 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 TOB2Q14106 344 aaPredicted RBP12.15□□□□□ -0.46
CLK3-226ENST00000569406 TRIM65Q6PJ69 517 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 CCDC50Q8IVM0 306 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 SDR16C5Q8N3Y7 309 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 DHX58Q96C10 678 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 TCEANC2Q96MN5 208 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 GORASP1Q9BQQ3 440 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 PLCH1Q4KWH8 1693 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 A0A087WWV3 80 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 A0A087WZG4 1122 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 EIF4BP23588 611 aaKnown RBP12.15□□□□□ -0.46
CLK3-226ENST00000569406 G3BP1Q13283 466 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLK3-226ENST00000569406 CUL3Q13618 768 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 GALNT17Q6IS24 598 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 MIPOL1Q8TD10 442 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 DBNDD2Q9BQY9 259 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 NACA2Q9H009 215 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 GOLGA6L7A0A1B0GV03 622 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 PPFIA3O75145 1194 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 FAM228AQ86W67 206 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 CUL5Q93034 780 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 WDR24Q96S15 920 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 UTP14AQ9BVJ6 771 aaKnown RBP12.15□□□□□ -0.46
CLK3-226ENST00000569406 KCND1Q9NSA2 647 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 BAIAP2L1Q9UHR4 511 aa12.15□□□□□ -0.46
CLK3-226ENST00000569406 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
CLK3-226ENST00000569406 AKAP11Q9UKA4 1901 aa12.15□□□□□ -0.47
CLK3-226ENST00000569406 MYO1BO43795 1136 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 RASSF9O75901 435 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 USP5P45974 858 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 KBTBD12Q3ZCT8 623 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 TTC5Q8N0Z6 440 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 DYDC1Q8WWB3 177 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 HOOK2Q96ED9 719 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 SEC62Q99442 399 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 ATP2C2O75185 946 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 FERP16591 822 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 SFSWAPQ12872 951 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 ARMCX5Q6P1M9 558 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 HNRNPLLQ8WVV9 542 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 FAM81BQ96LP2 452 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 SLC4A9Q96Q91 983 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 TRAIPQ9BWF2 469 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 MYO5AQ9Y4I1 1855 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 ERICH2A1L162 156 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 IPO5O00410 1097 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 Q4G0T1 1027 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 LMBR1LQ6UX01 489 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 CCDC150Q8NCX0 1101 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 JAKMIP1Q96N16 626 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 VCPKMTQ9H867 229 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 TBC1D7Q9P0N9 293 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 TFIP11Q9UBB9 837 aaKnown RBP12.14□□□□□ -0.47
CLK3-226ENST00000569406 ANKRD36CQ5JPF3 1778 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 CDHR2Q9BYE9 1310 aa12.14□□□□□ -0.47
CLK3-226ENST00000569406 LRP6O75581 1613 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 A0A0G2JLW4 131 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 FOXP2O15409 715 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 SMNDC1O75940 238 aaKnown RBP eCLIP12.13□□□□□ -0.476e-7■■□□□ 13.7
CLK3-226ENST00000569406 RHBDL3P58872 404 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 VSNL1P62760 191 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 CCDC12Q8WUD4 166 aaPredicted RBP12.13□□□□□ -0.47
CLK3-226ENST00000569406 STAMBPL1Q96FJ0 436 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 MPHOSPH8Q99549 860 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 FAM167BQ9BTA0 163 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 ANKZF1Q9H8Y5 726 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 XBP1P17861 261 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 GCLCP48506 637 aaPredicted RBP12.13□□□□□ -0.47
CLK3-226ENST00000569406 IFT88Q13099 833 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 FAM173BQ6P4H8 233 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 C11orf57Q6ZUT1 292 aaPredicted RBP12.13□□□□□ -0.47
CLK3-226ENST00000569406 ELOA2Q8IYF1 753 aaPredicted RBP12.13□□□□□ -0.47
CLK3-226ENST00000569406 HAUS7Q99871 368 aa12.13□□□□□ -0.47
CLK3-226ENST00000569406 PRDM11Q9NQV5 511 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms