RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 MYH1P12882 1939 aa16.7■□□□□ 0.26
CLN3-235ENST00000568497 FOCADQ5VW36 1801 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 TRIM6-TRIM34B2RNG4 842 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 ERC2O15083 957 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 RNF113AO15541 343 aaKnown RBP16.69■□□□□ 0.26
CLN3-235ENST00000568497 TBC1D12O60347 775 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 PEX10O60683 326 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 GDF11O95390 407 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 PLCD1P51178 756 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 CCL14Q16627 93 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 USP38Q8NB14 1042 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 SLC44A5Q8NCS7 719 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 ZNF280CQ8ND82 737 aa16.69■□□□□ 0.26
CLN3-235ENST00000568497 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.69■□□□□ 0.262e-6■■■■■ 40.7
CLN3-235ENST00000568497 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLN3-235ENST00000568497 NAV1Q8NEY1 1877 aa16.68■□□□□ 0.26
CLN3-235ENST00000568497 RGS2P41220 211 aa16.68■□□□□ 0.26
CLN3-235ENST00000568497 DYNLL2Q96FJ2 89 aa16.68■□□□□ 0.26
CLN3-235ENST00000568497 FAM227BQ96M60 508 aa16.68■□□□□ 0.26
CLN3-235ENST00000568497 SLC4A4Q9Y6R1 1079 aa16.68■□□□□ 0.26
CLN3-235ENST00000568497 GSPT1P15170 499 aaKnown RBP16.67■□□□□ 0.26
CLN3-235ENST00000568497 PLCG2P16885 1265 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 CNGA1P29973 690 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 UBE3CQ15386 1083 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 SH3D19Q5HYK7 790 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 GPRC5AQ8NFJ5 357 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 APBA2Q99767 749 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 MCM9Q9NXL9 1143 aa16.67■□□□□ 0.26
CLN3-235ENST00000568497 ATAD5Q96QE3 1844 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 A0A0D9SFI3 127 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 MAPK4P31152 587 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 DNAH12Q6ZR08 3092 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 PPM1EQ8WY54 764 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 APPBP2Q92624 585 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 USP6NLQ92738 828 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 BADQ92934 168 aa16.66■□□□□ 0.26
CLN3-235ENST00000568497 STRBPQ96SI9 672 aaKnown RBP16.66■□□□□ 0.26
CLN3-235ENST00000568497 CRNKL1Q9BZJ0 848 aaKnown RBP16.66■□□□□ 0.26
CLN3-235ENST00000568497 EPB41L4AQ9HCS5 686 aaPredicted RBP16.66■□□□□ 0.26
CLN3-235ENST00000568497 DCP1AQ9NPI6 582 aaPredicted RBP16.66■□□□□ 0.26
CLN3-235ENST00000568497 GPAA1O43292 621 aa16.65■□□□□ 0.26
CLN3-235ENST00000568497 POLR3DP05423 398 aaPredicted RBP16.65■□□□□ 0.26
CLN3-235ENST00000568497 CENPBP07199 599 aaPredicted RBP16.65■□□□□ 0.26
CLN3-235ENST00000568497 NMIQ13287 307 aaPredicted RBP16.65■□□□□ 0.26
CLN3-235ENST00000568497 VPS53Q5VIR6 699 aa16.65■□□□□ 0.26
CLN3-235ENST00000568497 CRACR2BQ8N4Y2 399 aaPredicted RBP16.65■□□□□ 0.26
CLN3-235ENST00000568497 PAGR1Q9BTK6 254 aa16.65■□□□□ 0.26
CLN3-235ENST00000568497 AS3MTQ9HBK9 375 aa16.65■□□□□ 0.26
CLN3-235ENST00000568497 TXNRD2Q9NNW7 524 aa16.65■□□□□ 0.26
CLN3-235ENST00000568497 DNM1LO00429 736 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 NPM3O75607 178 aaKnown RBP16.64■□□□□ 0.25
CLN3-235ENST00000568497 ZMYM1Q5SVZ6 1142 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 MFSD14CQ5VZR4 134 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 GPR142Q7Z601 462 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 IL27Q8NEV9 243 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 RNPC3Q96LT9 517 aaKnown RBP16.64■□□□□ 0.25
CLN3-235ENST00000568497 P2RX7Q99572 595 aaKnown RBP16.64■□□□□ 0.25
CLN3-235ENST00000568497 TMOD4Q9NZQ9 345 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 PI4KBQ9UBF8 816 aa16.64■□□□□ 0.25
CLN3-235ENST00000568497 DDX20Q9UHI6 824 aaKnown RBP16.64■□□□□ 0.25
CLN3-235ENST00000568497 USP17L5A8MUK1 530 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 GSG1L2A8MUP6 293 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 USP17L12C9JPN9 530 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 USP17L21D6R901 530 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 MYCNP04198 464 aaPredicted RBP16.63■□□□□ 0.25
CLN3-235ENST00000568497 NEFLP07196 543 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 HOXA7P31268 230 aaPredicted RBP16.63■□□□□ 0.25
CLN3-235ENST00000568497 HOXD11P31277 338 aaPredicted RBP16.63■□□□□ 0.25
CLN3-235ENST00000568497 HERVK_113P62684 666 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 MTMR2Q13614 643 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 GRIN2CQ14957 1233 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 ZSCAN25Q6NSZ9 544 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 PLEKHH3Q7Z736 793 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 ZNF589Q86UQ0 364 aaPredicted RBP16.63■□□□□ 0.25
CLN3-235ENST00000568497 CLEC10AQ8IUN9 316 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 ADAMTS19Q8TE59 1207 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 EVI5LQ96CN4 794 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 PORCNQ9H237 461 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 IL25Q9H293 177 aa16.63■□□□□ 0.25
CLN3-235ENST00000568497 FOXP2O15409 715 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 MSCO60682 206 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 APPP05067 770 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 CAP2P40123 477 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 ERVK-9P63128 1117 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 ERVK-24P63145 666 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 MORN1Q5T089 497 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 WDR78Q5VTH9 848 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 LPAR1Q92633 364 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 CCDC136Q96JN2 1154 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 UHRF1Q96T88 793 aaPredicted RBP16.62■□□□□ 0.25
CLN3-235ENST00000568497 INCENPQ9NQS7 918 aa16.62■□□□□ 0.25
CLN3-235ENST00000568497 MINDY4BA8MYZ0 360 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 HLA-DOAP06340 250 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 SHMT1P34896 483 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 TRIM60Q495X7 471 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 GJC2Q5T442 439 aaPredicted RBP16.61■□□□□ 0.25
CLN3-235ENST00000568497 TTC22Q5TAA0 569 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 CTR9Q6PD62 1173 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 TRIM34Q9BYJ4 488 aa16.61■□□□□ 0.25
CLN3-235ENST00000568497 THEGQ9P2T0 379 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms