RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DCTPP1Q9H773 170 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 ECHDC1Q9NTX5 307 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 HOXC10Q9NYD6 342 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 SLC4A4Q9Y6R1 1079 aa19.36■□□□□ 0.69
CLN3-229ENST00000567963 CYP2D7A0A087X1C5 515 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 SLC15A5A6NIM6 579 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 SMIM22K7EJ46 135 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 AKR1B1P15121 316 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 PTPREP23469 700 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 CDK8P49336 464 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 KIAA1755Q5JYT7 1200 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 WDR78Q5VTH9 848 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 AMOTL1Q8IY63 956 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 DDRGK1Q96HY6 314 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 CCDC17Q96LX7 622 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 ALPK3Q96L96 1907 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 CTR9Q6PD62 1173 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 C16orf86Q6ZW13 317 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 TANGO6Q9C0B7 1094 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 IVNS1ABPQ9Y6Y0 642 aa19.35■□□□□ 0.69
CLN3-229ENST00000567963 TRIOBPQ9H2D6 2365 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 CCND3P30281 292 aaPredicted RBP19.34■□□□□ 0.69
CLN3-229ENST00000567963 ICA1Q05084 483 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 GRB14Q14449 540 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 LHX8Q68G74 356 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 LPAR1Q92633 364 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 C11orf49Q9H6J7 331 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 ARHGEF10LQ9HCE6 1279 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 FLRT1Q9NZU1 646 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 TMX2Q9Y320 296 aa19.34■□□□□ 0.69
CLN3-229ENST00000567963 RLFQ13129 1914 aa19.33■□□□□ 0.69
CLN3-229ENST00000567963 HOXC6P09630 235 aa19.33■□□□□ 0.68
CLN3-229ENST00000567963 CLEC10AQ8IUN9 316 aa19.33■□□□□ 0.68
CLN3-229ENST00000567963 SPICE1Q8N0Z3 855 aa19.32■□□□□ 0.68
CLN3-229ENST00000567963 KBTBD3Q8NAB2 608 aa19.32■□□□□ 0.68
CLN3-229ENST00000567963 STRBPQ96SI9 672 aaKnown RBP19.32■□□□□ 0.68
CLN3-229ENST00000567963 MOV10L1Q9BXT6 1211 aaKnown RBP19.32■□□□□ 0.68
CLN3-229ENST00000567963 SH2D4AQ9H788 454 aa19.32■□□□□ 0.68
CLN3-229ENST00000567963 VCPKMTQ9H867 229 aa19.32■□□□□ 0.68
CLN3-229ENST00000567963 STRNO43815 780 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 DSG3P32926 999 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 MFSD14CQ5VZR4 134 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 MB21D1Q8N884 522 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 NPLOC4Q8TAT6 608 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 GPATCH3Q96I76 525 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 SPATC1LQ9H0A9 340 aa19.31■□□□□ 0.68
CLN3-229ENST00000567963 FLOT1O75955 427 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 EEF2P13639 858 aaKnown RBP19.3■□□□□ 0.68
CLN3-229ENST00000567963 ATP2B2Q01814 1243 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 KANSL2Q9H9L4 492 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 ARPP21Q9UBL0 812 aaPredicted RBP19.3■□□□□ 0.68
CLN3-229ENST00000567963 DNAH12Q6ZR08 3092 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 PFASO15067 1338 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 A0A0G2JMZ2 1700 aa19.3■□□□□ 0.68
CLN3-229ENST00000567963 GSG1L2A8MUP6 293 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 IGHA2P01877 340 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 ERCC3P19447 782 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 TSHZ3Q63HK5 1081 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 C7orf61Q8IZ16 206 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 SHCBP1Q8NEM2 672 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 OSBP2Q969R2 916 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 STAP2Q9UGK3 403 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 LAMA3Q16787 3333 aa19.29■□□□□ 0.68
CLN3-229ENST00000567963 WDR46O15213 610 aaKnown RBP19.28■□□□□ 0.68
CLN3-229ENST00000567963 COL6A1P12109 1028 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 ADORA2AP29274 412 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 SBK1Q52WX2 424 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 GIMAP6Q6P9H5 292 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 DPP9Q86TI2 863 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 APPBP2Q92624 585 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 A0A1W2PPC1 479 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 RNF113AO15541 343 aaKnown RBP19.28■□□□□ 0.68
CLN3-229ENST00000567963 CYP2C19P33261 490 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 PLS1Q14651 629 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 ATG4CQ96DT6 458 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 MROH8Q9H579 483 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 PCDHB15Q9Y5E8 787 aa19.28■□□□□ 0.68
CLN3-229ENST00000567963 PARP14Q460N5 1801 aa19.27■□□□□ 0.68
CLN3-229ENST00000567963 ZFYP08048 801 aaPredicted RBP19.27■□□□□ 0.67
CLN3-229ENST00000567963 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.27■□□□□ 0.67
CLN3-229ENST00000567963 ADAMTS5Q9UNA0 930 aa19.27■□□□□ 0.67
CLN3-229ENST00000567963 ZNF236Q9UL36 1845 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 MSCO60682 206 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 CNGA1P29973 690 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 OLFML2BQ68BL8 750 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 NCAPG2Q86XI2 1143 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 GDF15Q99988 308 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 GOPCQ9HD26 462 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 DDX20Q9UHI6 824 aaKnown RBP19.26■□□□□ 0.67
CLN3-229ENST00000567963 ZMYND8Q9ULU4 1186 aaPredicted RBP19.26■□□□□ 0.67
CLN3-229ENST00000567963 FRMPD3Q5JV73 1810 aa19.26■□□□□ 0.67
CLN3-229ENST00000567963 COBLO75128 1261 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 RASA1P20936 1047 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 BMP8BP34820 402 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 TMEM132BQ14DG7 1078 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 SAMD1Q6SPF0 538 aaPredicted RBP19.25■□□□□ 0.67
CLN3-229ENST00000567963 ABRAQ8N0Z2 381 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 TRPV1Q8NER1 839 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 MKNK2Q9HBH9 465 aa19.25■□□□□ 0.67
CLN3-229ENST00000567963 TTC41PQ6P2S7 1318 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms