RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-209ENST00000567635 RPAP3Q9H6T3 665 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-209ENST00000567635 KANSL2Q9H9L4 492 aa8.28□□□□□ -1.08
SF3B3-209ENST00000567635 MKNK2Q9HBH9 465 aa8.28□□□□□ -1.08
SF3B3-209ENST00000567635 ARPP21Q9UBL0 812 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-209ENST00000567635 RABGAP1Q9Y3P9 1069 aa8.28□□□□□ -1.08
SF3B3-209ENST00000567635 SMCHD1A6NHR9 2005 aa8.28□□□□□ -1.08
SF3B3-209ENST00000567635 COL11A1P12107 1806 aaPredicted RBP8.28□□□□□ -1.08
SF3B3-209ENST00000567635 PARP14Q460N5 1801 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 M0R2C6 588 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 CAPN2P17655 700 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 GJA8P48165 433 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 TDO2P48775 406 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 PDE1AP54750 535 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 CCNA1P78396 465 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 ICA1Q05084 483 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 ZMYM1Q5SVZ6 1142 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 LBX2Q6XYB7 198 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 PLEKHH3Q7Z736 793 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 IFNL3Q8IZI9 196 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 STK11IPQ8N1F8 1099 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 EXOC6Q8TAG9 804 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 LPAR1Q92633 364 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 EVI5LQ96CN4 794 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 NUDT12Q9BQG2 462 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 NACAP1Q9BZK3 213 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 UNC93B1Q9H1C4 597 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 SH2D4AQ9H788 454 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 ZNF287Q9HBT7 754 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 TMX2Q9Y320 296 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 SUPT16HQ9Y5B9 1047 aaKnown RBP8.27□□□□□ -1.09
SF3B3-209ENST00000567635 SALL3Q9BXA9 1300 aa8.27□□□□□ -1.09
SF3B3-209ENST00000567635 CNMDO75829 334 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 SGPL1O95470 568 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 IGHDP01880 384 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 TFRCP02786 760 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 INHAP05111 366 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 XRCC5P13010 732 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 EEF2P13639 858 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 ATP2B2Q01814 1243 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 KIAA1755Q5JYT7 1200 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 GPR142Q7Z601 462 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 TICAM2Q86XR7 235 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 SMC5Q8IY18 1101 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 TRMT44Q8IYL2 757 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 ZNF444Q8N0Y2 327 aaPredicted RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 SEC62Q99442 399 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 TANGO6Q9C0B7 1094 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 PORCNQ9H237 461 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 VCPKMTQ9H867 229 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 CWC22Q9HCG8 908 aaKnown RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 BTBD7Q9P203 1132 aa8.26□□□□□ -1.09
SF3B3-209ENST00000567635 GREB1LQ9C091 1923 aaPredicted RBP8.26□□□□□ -1.09
SF3B3-209ENST00000567635 SLC15A5A6NIM6 579 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 SPDYE16A6NNV3 312 aaPredicted RBP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 HMGCRP04035 888 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 SLC3A2P08195 630 aaKnown RBP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 CYP2B6P20813 491 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 RASA1P20936 1047 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 RGS2P41220 211 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 MORN1Q5T089 497 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 PRPF38BQ5VTL8 546 aaKnown RBP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 B4GALNT3Q6L9W6 998 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 CHD1LQ86WJ1 897 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 CLEC10AQ8IUN9 316 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 SPICE1Q8N0Z3 855 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 MB21D1Q8N884 522 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 U2AF1L4Q8WU68 220 aaKnown RBP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 SOCS4Q8WXH5 440 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 USP6NLQ92738 828 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 LNPKQ9C0E8 428 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 NAPBQ9H115 298 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 EPB41L4AQ9HCS5 686 aaPredicted RBP8.25□□□□□ -1.09
SF3B3-209ENST00000567635 GOPCQ9HD26 462 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 HELLSQ9NRZ9 838 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 RPTORQ8N122 1335 aa8.25□□□□□ -1.09
SF3B3-209ENST00000567635 PLXNA1Q9UIW2 1896 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 WDR46O15213 610 aaKnown RBP8.24□□□□□ -1.09
SF3B3-209ENST00000567635 STRNO43815 780 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 RAD21O60216 631 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 FLOT1O75955 427 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 PTPREP23469 700 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 NUCB1Q02818 461 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 PDE4BQ07343 736 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 MAP2K5Q13163 448 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 WDR78Q5VTH9 848 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 PLEKHM2Q8IWE5 1019 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 SHISA4Q96DD7 197 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 DEFB118Q96PH6 123 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 HMX1Q9NP08 348 aaPredicted RBP8.24□□□□□ -1.09
SF3B3-209ENST00000567635 PAK6Q9NQU5 681 aaPredicted RBP8.24□□□□□ -1.09
SF3B3-209ENST00000567635 NYAP2Q9P242 653 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 CLIP2Q9UDT6 1046 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 IVNS1ABPQ9Y6Y0 642 aa8.24□□□□□ -1.09
SF3B3-209ENST00000567635 ROBO3Q96MS0 1386 aa8.23□□□□□ -1.09
SF3B3-209ENST00000567635 TRIM6-TRIM34B2RNG4 842 aa8.23□□□□□ -1.09
SF3B3-209ENST00000567635 PRDM1O75626 825 aa8.23□□□□□ -1.09
SF3B3-209ENST00000567635 ZKSCAN1P17029 563 aaPredicted RBP8.23□□□□□ -1.09
SF3B3-209ENST00000567635 PPARAQ07869 468 aa8.23□□□□□ -1.09
SF3B3-209ENST00000567635 TRIM32Q13049 653 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms