RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MAP3K21Q5TCX8 1036 aa17.84■□□□□ 0.45
CLN3-213ENST00000565047 PAGR1Q9BTK6 254 aa17.84■□□□□ 0.45
CLN3-213ENST00000565047 IGHA2P01877 340 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 IGHDP01880 384 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 GNAT2P19087 354 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 RASA1P20936 1047 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 PDE1AP54750 535 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 ICA1Q05084 483 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 COG2Q14746 738 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 SMC5Q8IY18 1101 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 IFNL3Q8IZI9 196 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 LPAR1Q92633 364 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 DDRGK1Q96HY6 314 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 VCPKMTQ9H867 229 aa17.83■□□□□ 0.44
CLN3-213ENST00000565047 A0A0G2JMZ2 1700 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 IGKV6D-41A0A0C4DH26 115 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 HMGCRP04035 888 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 EEF2P13639 858 aaKnown RBP17.82■□□□□ 0.44
CLN3-213ENST00000565047 CYP2B6P20813 491 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 PLEKHH3Q7Z736 793 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 AMOTL1Q8IY63 956 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 SOCS4Q8WXH5 440 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 NUDT12Q9BQG2 462 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 KANSL2Q9H9L4 492 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 ARHGEF10LQ9HCE6 1279 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 HOXC10Q9NYD6 342 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 MYH8P13535 1937 aa17.82■□□□□ 0.44
CLN3-213ENST00000565047 DSG3P32926 999 aa17.81■□□□□ 0.44
CLN3-213ENST00000565047 ADAMTS5Q9UNA0 930 aa17.81■□□□□ 0.44
CLN3-213ENST00000565047 MINDY4BA8MYZ0 360 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 CAPN2P17655 700 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 PTPREP23469 700 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 CCL14Q16627 93 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 LRRFIP1Q32MZ4 808 aaKnown RBP17.8■□□□□ 0.44
CLN3-213ENST00000565047 SPICE1Q8N0Z3 855 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 EXOC6Q8TAG9 804 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 DEFB118Q96PH6 123 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 FSD1Q9BTV5 496 aa17.8■□□□□ 0.44
CLN3-213ENST00000565047 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-213ENST00000565047 PARP14Q460N5 1801 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 RPTORQ8N122 1335 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 HOXC6P09630 235 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 MNX1P50219 401 aaPredicted RBP17.79■□□□□ 0.44
CLN3-213ENST00000565047 CCNA1P78396 465 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 MAP2K5Q13163 448 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 GRB14Q14449 540 aa17.79■□□□□ 0.44
CLN3-213ENST00000565047 MOV10L1Q9BXT6 1211 aaKnown RBP17.79■□□□□ 0.44
CLN3-213ENST00000565047 SLC15A5A6NIM6 579 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 WDR46O15213 610 aaKnown RBP17.78■□□□□ 0.44
CLN3-213ENST00000565047 RGS2P41220 211 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 MKL1Q969V6 931 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 EVI5LQ96CN4 794 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 ATG4CQ96DT6 458 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 APBA2Q99767 749 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 TANGO6Q9C0B7 1094 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 SPATC1LQ9H0A9 340 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 SH2D4AQ9H788 454 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 FLRT1Q9NZU1 646 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 NYAP2Q9P242 653 aa17.78■□□□□ 0.44
CLN3-213ENST00000565047 SLC34A2O95436 690 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 TDO2P48775 406 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 CACNB2Q08289 660 aaPredicted RBP17.77■□□□□ 0.44
CLN3-213ENST00000565047 CCDC129Q6ZRS4 1044 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 TICAM2Q86XR7 235 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 TRMT44Q8IYL2 757 aaKnown RBP17.77■□□□□ 0.44
CLN3-213ENST00000565047 STK11IPQ8N1F8 1099 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 MB21D1Q8N884 522 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 SHCBP1Q8NEM2 672 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 REPS2Q8NFH8 660 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 LNPKQ9C0E8 428 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 RWDD1Q9H446 243 aaPredicted RBP17.77■□□□□ 0.44
CLN3-213ENST00000565047 MKNK2Q9HBH9 465 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 HMX1Q9NP08 348 aaPredicted RBP17.77■□□□□ 0.44
CLN3-213ENST00000565047 FBXO28Q9NVF7 368 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 TACC3Q9Y6A5 838 aa17.77■□□□□ 0.44
CLN3-213ENST00000565047 PRDM1O75626 825 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 FLOT1O75955 427 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 TFRCP02786 760 aaKnown RBP17.76■□□□□ 0.43
CLN3-213ENST00000565047 APPP05067 770 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 TMEM132BQ14DG7 1078 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 VPS53Q5VIR6 699 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 LHX8Q68G74 356 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 NPLOC4Q8TAT6 608 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 OSBPL3Q9H4L5 887 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 PLIN4Q96Q06 1357 aa17.76■□□□□ 0.43
CLN3-213ENST00000565047 FARP2O94887 1054 aaPredicted RBP17.75■□□□□ 0.43
CLN3-213ENST00000565047 PRKAR2AP13861 404 aaKnown RBP17.75■□□□□ 0.43
CLN3-213ENST00000565047 ZKSCAN1P17029 563 aaPredicted RBP17.75■□□□□ 0.43
CLN3-213ENST00000565047 ERCC3P19447 782 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 NUCB1Q02818 461 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 PLEKHM2Q8IWE5 1019 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 CEP95Q96GE4 821 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 HELLSQ9NRZ9 838 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 MTMR4Q9NYA4 1195 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 OGDHLQ9ULD0 1010 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-213ENST00000565047 ZNF236Q9UL36 1845 aa17.75■□□□□ 0.43
CLN3-213ENST00000565047 F5H6K3 240 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 FGRP09769 529 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 KLRC3Q07444 240 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms