RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 PDE4DIPQ5VU43 2346 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 BTAF1O14981 1849 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 CICQ96RK0 1608 aaPredicted RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 BRD4O60885 1362 aaPredicted RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 EIF3AQ14152 1382 aaKnown RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 KIAA0232Q92628 1395 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 HSPA1AP0DMV8 641 aaKnown RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 HSPA1BP0DMV9 641 aaKnown RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 ADH5P11766 374 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 YBX3P16989 372 aaKnown RBP eCLIP7.64□□□□□ -1.192e-6■■□□□ 14.5
VPS35-204ENST00000563884 POU4F3Q15319 338 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 HP1BP3Q5SSJ5 553 aaPredicted RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 C16orf71Q8IYS4 520 aaPredicted RBP7.64□□□□□ -1.19
VPS35-204ENST00000563884 PMFBP1Q8TBY8 1022 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 FMNL2Q96PY5 1086 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 TRAIPQ9BWF2 469 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 NRSN2Q9GZP1 204 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 RAD18Q9NS91 495 aa7.64□□□□□ -1.19
VPS35-204ENST00000563884 CYP26A1O43174 497 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 NEFLP07196 543 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 RAB6AP20340 208 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 FSTL1Q12841 308 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 AKAP4Q5JQC9 854 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 DYMQ7RTS9 669 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 DDX54Q8TDD1 881 aaKnown RBP7.63□□□□□ -1.19
VPS35-204ENST00000563884 TCF12Q99081 682 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 ZFYVE1Q9HBF4 777 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 PRKAG2Q9UGJ0 569 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 PKD1L3Q7Z443 1732 aa7.63□□□□□ -1.19
VPS35-204ENST00000563884 USP19O94966 1318 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 RPGRIP1LQ68CZ1 1315 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 NDUFB5O43674 189 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 ADMP35318 185 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 MSMPQ1L6U9 139 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 USPL1Q5W0Q7 1092 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 ZAR1Q86SH2 424 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 NLGN2Q8NFZ4 835 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 EZH1Q92800 747 aaPredicted RBP7.62□□□□□ -1.19
VPS35-204ENST00000563884 CORO1BQ9BR76 489 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 ADGRE2Q9UHX3 823 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 ACTL7BQ9Y614 415 aa7.62□□□□□ -1.19
VPS35-204ENST00000563884 BTBD11A6QL63 1104 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 CTSBP07858 339 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 NFICP08651 508 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 MAP7Q14244 749 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 DDB1Q16531 1140 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 ABI1Q8IZP0 508 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 RBCK1Q9BYM8 510 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 EHD4Q9H223 541 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 CCDC39Q9UFE4 941 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 AP4E1Q9UPM8 1137 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 CRB1P82279 1406 aa7.61□□□□□ -1.19
VPS35-204ENST00000563884 FAM170BA6NMN3 283 aa7.6□□□□□ -1.19
VPS35-204ENST00000563884 KCNA1Q09470 495 aa7.6□□□□□ -1.19
VPS35-204ENST00000563884 DUSP27Q5VZP5 1158 aa7.6□□□□□ -1.19
VPS35-204ENST00000563884 VSIG10LQ86VR7 867 aa7.6□□□□□ -1.19
VPS35-204ENST00000563884 TP53INP2Q8IXH6 220 aa7.6□□□□□ -1.19
VPS35-204ENST00000563884 NUP155O75694 1391 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 ABCC11Q96J66 1382 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 CHRNA2Q15822 529 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 KIAA0319Q5VV43 1072 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 FBXL18Q96ME1 805 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 C10orf71Q711Q0 1435 aa7.59□□□□□ -1.19
VPS35-204ENST00000563884 COL5A2P05997 1499 aaPredicted RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 CPNE3O75131 537 aaKnown RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 ECEL1O95672 775 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 B3GALT4O96024 378 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 PRNPP04156 253 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 ASPAP45381 313 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 CYP27A1Q02318 531 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 ORC1Q13415 861 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 PDE3AQ14432 1141 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 ALKBH8Q96BT7 664 aaKnown RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 TRIM56Q9BRZ2 755 aaKnown RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 SEMA6CQ9H3T2 930 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 ZNF576Q9H609 170 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 LRRC4CQ9HCJ2 640 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 NPHS2Q9NP85 383 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 FAM105AQ9NUU6 356 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 BSDC1Q9NW68 430 aaPredicted RBP7.58□□□□□ -1.2
VPS35-204ENST00000563884 PLEKHG2Q9H7P9 1386 aa7.58□□□□□ -1.2
VPS35-204ENST00000563884 GPR182O15218 404 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 WAPLQ7Z5K2 1190 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 TMC1Q8TDI8 760 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 GATA6Q92908 595 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 DMRTB1Q96MA1 342 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 ACSS3Q9H6R3 686 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 PRDM10Q9NQV6 1147 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 STK26Q9P289 416 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 CD2APQ9Y5K6 639 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 VPS8Q8N3P4 1428 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 CPDO75976 1380 aa7.57□□□□□ -1.2
VPS35-204ENST00000563884 LY75O60449 1722 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 YTHDC2Q9H6S0 1430 aaKnown RBP7.56□□□□□ -1.2
VPS35-204ENST00000563884 ITPKAP23677 461 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 ZNF765Q7L2R6 523 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 FLCNQ8NFG4 579 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 DNAJC25Q9H1X3 360 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 LGR6Q9HBX8 967 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms