RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SAPCD2Q86UD0 394 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 ZNF280CQ8ND82 737 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 OTUD5Q96G74 571 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 AS3MTQ9HBK9 375 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 SYNPO2Q9UMS6 1093 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 LIMCH1Q9UPQ0 1083 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 AFG3L2Q9Y4W6 797 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 SLC12A7Q9Y666 1083 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 TLL2Q9Y6L7 1015 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 NID2Q14112 1375 aa19.42■□□□□ 0.7
VPS4A-202ENST00000562754 TMEM88BA6NKF7 163 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 DDAH1O94760 285 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 RXRAP19793 462 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 PDIA3P30101 505 aaKnown RBP19.41■□□□□ 0.7
VPS4A-202ENST00000562754 PPATQ06203 517 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 TROAPQ12815 778 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 PPIL2Q13356 520 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 MTMR2Q13614 643 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 ZYXQ15942 572 aaKnown RBP19.41■□□□□ 0.7
VPS4A-202ENST00000562754 ME3Q16798 604 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 CATIPQ7Z7H3 387 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 MICU3Q86XE3 530 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 OPTNQ96CV9 577 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 SLC10A4Q96EP9 437 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 FEZ1Q99689 392 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 TBC1D2Q9BYX2 928 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 KIAA1683Q9H0B3 1180 aa19.41■□□□□ 0.7
VPS4A-202ENST00000562754 NAP1L2Q9ULW6 460 aaPredicted RBP19.41■□□□□ 0.7
VPS4A-202ENST00000562754 TRIM75PA6NK02 468 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 ZBTB43O43298 467 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 NDUFB10O96000 172 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 MCM2P49736 904 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 ST3GAL1Q11201 340 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 DGKZQ13574 1117 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 GMCL1P1Q8NEA9 526 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 CHMP4CQ96CF2 233 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 ZNF274Q96GC6 653 aaPredicted RBP19.4■□□□□ 0.7
VPS4A-202ENST00000562754 WNK4Q96J92 1243 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 SH2D4AQ9H788 454 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 VCPKMTQ9H867 229 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 MTMR7Q9Y216 660 aa19.4■□□□□ 0.7
VPS4A-202ENST00000562754 USP17L10C9JJH3 530 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 IRF6O14896 467 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 SNHG28P0DPA3 235 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 PDHBP11177 359 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 RCAN1P53805 252 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 BACE1P56817 501 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 STK3Q13188 491 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 CCDC144CPQ8IYA2 1237 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 NUP133Q8WUM0 1156 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 TMX3Q96JJ7 454 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 KCNH4Q9UQ05 1017 aa19.39■□□□□ 0.69
VPS4A-202ENST00000562754 GOLGA8AA7E2F4 631 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 F5H6K3 240 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 PFKFB2O60825 505 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 KLRC3Q07444 240 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 GRM4Q14833 912 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 SLFN13Q68D06 897 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 RASAL3Q86YV0 1011 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 NECAB1Q8N987 351 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 NCOA5Q9HCD5 579 aaKnown RBP19.38■□□□□ 0.69
VPS4A-202ENST00000562754 GOPCQ9HD26 462 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 EMILIN3Q9NT22 766 aa19.38■□□□□ 0.69
VPS4A-202ENST00000562754 FAM217BQ9NTX9 383 aaPredicted RBP19.38■□□□□ 0.69
VPS4A-202ENST00000562754 K7ELQ4 463 aaPredicted RBP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 RAD21O60216 631 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 CDC27P30260 824 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 METAP2P50579 478 aaKnown RBP eCLIP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 HMGCS2P54868 508 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 CCT2P78371 535 aaKnown RBP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 SH3D19Q5HYK7 790 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 SYNE3Q6ZMZ3 975 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 HSCBQ8IWL3 235 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 SPICE1Q8N0Z3 855 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 C12orf42Q96LP6 360 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 ZSCAN31Q96LW9 406 aaPredicted RBP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 NUP88Q99567 741 aaPredicted RBP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 ABT1Q9ULW3 272 aaKnown RBP19.37■□□□□ 0.69
VPS4A-202ENST00000562754 PARP14Q460N5 1801 aa19.37■□□□□ 0.69
VPS4A-202ENST00000562754 FRMPD2Q68DX3 1309 aaPredicted RBP19.36■□□□□ 0.69
VPS4A-202ENST00000562754 A0A0G2JLL6 359 aaPredicted RBP19.36■□□□□ 0.69
VPS4A-202ENST00000562754 C19orf81C9J6K1 198 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 CXCL11O14625 94 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 CALM1P0DP23 149 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 CALM2P0DP24 149 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 CALM3P0DP25 149 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 APLP1P51693 650 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 USP14P54578 494 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 SCRN1Q12765 414 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 RTN1Q16799 776 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 SPRYD7Q5W111 196 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 RGMBQ6NW40 437 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 USP17L2Q6R6M4 530 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 PRRT2Q7Z6L0 340 aaPredicted RBP19.36■□□□□ 0.69
VPS4A-202ENST00000562754 STAG2Q8N3U4 1231 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 FANCBQ8NB91 859 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 DCAF4Q8WV16 495 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 GTF3C6Q969F1 213 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 GMCL1Q96IK5 515 aa19.36■□□□□ 0.69
VPS4A-202ENST00000562754 MAP3K14Q99558 947 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms