RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 ZDHHC9Q9Y397 364 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 CNTNAP5Q8WYK1 1306 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 CTNND1O60716 968 aaKnown RBP16.19■□□□□ 0.18
CLK3-209ENST00000562670 GDF11O95390 407 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 PDHBP11177 359 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 SSRP1Q08945 709 aaKnown RBP16.19■□□□□ 0.18
CLK3-209ENST00000562670 PKP1Q13835 747 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 SEPT2Q15019 361 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 SUPT20HL1Q3ZLR7 823 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 LARP1BQ659C4 914 aaKnown RBP16.19■□□□□ 0.18
CLK3-209ENST00000562670 SULF1Q8IWU6 871 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 CCDC144CPQ8IYA2 1237 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 FAM177A1Q8N128 213 aaPredicted RBP16.19■□□□□ 0.18
CLK3-209ENST00000562670 DCPSQ96C86 337 aaKnown RBP16.19■□□□□ 0.18
CLK3-209ENST00000562670 SPZ1Q9BXG8 430 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 MAD2L2Q9UI95 211 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 MTMR6Q9Y217 621 aa16.19■□□□□ 0.18
CLK3-209ENST00000562670 POTECB2RU33 542 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 PRPF3O43395 683 aaKnown RBP16.18■□□□□ 0.18
CLK3-209ENST00000562670 DEXIO95424 95 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 ZSCAN22P10073 491 aaPredicted RBP16.18■□□□□ 0.18
CLK3-209ENST00000562670 EEF2P13639 858 aaKnown RBP16.18■□□□□ 0.18
CLK3-209ENST00000562670 GPATCH4Q5T3I0 446 aaKnown RBP16.18■□□□□ 0.18
CLK3-209ENST00000562670 NBPF12Q5TAG4 269 aaPredicted RBP16.18■□□□□ 0.18
CLK3-209ENST00000562670 SIAH1Q8IUQ4 282 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 DCAF4Q8WV16 495 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 DDX11Q96FC9 970 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 SH2D4AQ9H788 454 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 ARHGEF10LQ9HCE6 1279 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 CLIP2Q9UDT6 1046 aa16.18■□□□□ 0.18
CLK3-209ENST00000562670 DCAF8L1A6NGE4 600 aa16.17■□□□□ 0.18
CLK3-209ENST00000562670 PLEKHA8P1O95397 391 aa16.17■□□□□ 0.18
CLK3-209ENST00000562670 PARP1P09874 1014 aaKnown RBP16.17■□□□□ 0.18
CLK3-209ENST00000562670 JAG1P78504 1218 aa16.17■□□□□ 0.18
CLK3-209ENST00000562670 NOL9Q5SY16 702 aaKnown RBP16.17■□□□□ 0.18
CLK3-209ENST00000562670 MIGA2Q7L4E1 593 aa16.17■□□□□ 0.18
CLK3-209ENST00000562670 LRRC47Q8N1G4 583 aaKnown RBP16.17■□□□□ 0.18
CLK3-209ENST00000562670 TNPO1Q92973 898 aaKnown RBP16.17■□□□□ 0.18
CLK3-209ENST00000562670 GMCL1Q96IK5 515 aa16.17■□□□□ 0.18
CLK3-209ENST00000562670 ZNF543Q08ER8 600 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 SHROOM1Q2M3G4 852 aaPredicted RBP16.16■□□□□ 0.18
CLK3-209ENST00000562670 CLEC10AQ8IUN9 316 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 SRBD1Q8N5C6 995 aaKnown RBP16.16■□□□□ 0.18
CLK3-209ENST00000562670 FBXO18Q8NFZ0 1043 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 PHKBQ93100 1093 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 SLC26A6Q9BXS9 759 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 TMX2Q9Y320 296 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 ATP6V1DQ9Y5K8 247 aa16.16■□□□□ 0.18
CLK3-209ENST00000562670 F13A1P00488 732 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 AKAP17AQ02040 695 aaKnown RBP16.15■□□□□ 0.18
CLK3-209ENST00000562670 CDC37L1Q7L3B6 337 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 KRT26Q7Z3Y9 468 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 USP48Q86UV5 1035 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 SCYL3Q8IZE3 742 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 C8orf76Q96K31 380 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 GBP4Q96PP9 640 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 ALG1Q9BT22 464 aa16.15■□□□□ 0.18
CLK3-209ENST00000562670 MYH6P13533 1939 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 VPS37CA5D8V6 355 aaPredicted RBP16.14■□□□□ 0.17
CLK3-209ENST00000562670 KLRF2D3W0D1 207 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 H3BQV1 296 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 IFFO2Q5TF58 517 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 STAG2Q8N3U4 1231 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 KLRG1Q96E93 195 aa16.14■□□□□ 0.17
CLK3-209ENST00000562670 ZSCAN16Q9H4T2 348 aaPredicted RBP16.14■□□□□ 0.17
CLK3-209ENST00000562670 SCAF8Q9UPN6 1271 aaKnown RBP16.14■□□□□ 0.17
CLK3-209ENST00000562670 USP17L5A8MUK1 530 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 hCG_1984214I3L0E3 225 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 XBP1P17861 261 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 PKN1Q16512 942 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 PFKFB3Q16875 520 aaPredicted RBP16.13■□□□□ 0.17
CLK3-209ENST00000562670 USP17L2Q6R6M4 530 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 ZNF713Q8N859 430 aaPredicted RBP16.13■□□□□ 0.17
CLK3-209ENST00000562670 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLK3-209ENST00000562670 WRNIP1Q96S55 665 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 WDR18Q9BV38 432 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 RIOX1Q9H6W3 641 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 GOPCQ9HD26 462 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 POLR2AP24928 1970 aaKnown RBP16.13■□□□□ 0.17
CLK3-209ENST00000562670 OTOFQ9HC10 1997 aa16.13■□□□□ 0.17
CLK3-209ENST00000562670 A0A1W2PRG0 241 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 ADM5C9JUS6 153 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 F5H6K3 240 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 CYTH3O43739 400 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 NDUFB10O96000 172 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 SCG2P13521 617 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 VEGFAP15692 232 aaPredicted RBP16.12■□□□□ 0.17
CLK3-209ENST00000562670 NF2P35240 595 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 ATP2B2Q01814 1243 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 KLRC3Q07444 240 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 TRIM29Q14134 588 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 MAP3K11Q16584 847 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 SLC35G1Q2M3R5 365 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 SLFN13Q68D06 897 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 KIAA1683Q9H0B3 1180 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 VCPKMTQ9H867 229 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 SH3GLB2Q9NR46 395 aa16.12■□□□□ 0.17
CLK3-209ENST00000562670 PHIPQ8WWQ0 1821 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 UNCXA6NJT0 531 aa16.11■□□□□ 0.17
CLK3-209ENST00000562670 PPP1R12BO60237 982 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms