RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TTC6Q86TZ1 520 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 SLC44A5Q8NCS7 719 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 ACER1Q8TDN7 264 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 MCM9Q9NXL9 1143 aa22.97■■□□□ 1.27
VPS35-202ENST00000561713 A0A0G2JMZ2 1700 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 GLRX3O76003 335 aaKnown RBP22.96■■□□□ 1.27
VPS35-202ENST00000561713 MBD4O95243 580 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 VCAM1P19320 739 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 MFSD14CQ5VZR4 134 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 SENP6Q9GZR1 1112 aaPredicted RBP22.96■■□□□ 1.27
VPS35-202ENST00000561713 KIAA1683Q9H0B3 1180 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 BTBD7Q9P203 1132 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 RLFQ13129 1914 aa22.96■■□□□ 1.27
VPS35-202ENST00000561713 SLC15A5A6NIM6 579 aa22.95■■□□□ 1.26
VPS35-202ENST00000561713 PRKAB2O43741 272 aa22.95■■□□□ 1.26
VPS35-202ENST00000561713 PTPREP23469 700 aa22.95■■□□□ 1.26
VPS35-202ENST00000561713 USP14P54578 494 aa22.95■■□□□ 1.26
VPS35-202ENST00000561713 DCP1AQ9NPI6 582 aaPredicted RBP22.95■■□□□ 1.26
VPS35-202ENST00000561713 EYSQ5T1H1 3165 aa22.95■■□□□ 1.26
VPS35-202ENST00000561713 SMIM22K7EJ46 135 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 GUCY1A2P33402 732 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 ADD2P35612 726 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 GABPAQ06546 454 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 SEPT2Q15019 361 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 TMED8Q6PL24 325 aaPredicted RBP22.94■■□□□ 1.26
VPS35-202ENST00000561713 CLEC10AQ8IUN9 316 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 LRRCC1Q9C099 1032 aa22.94■■□□□ 1.26
VPS35-202ENST00000561713 DDX20Q9UHI6 824 aaKnown RBP22.94■■□□□ 1.26
VPS35-202ENST00000561713 CYP2D7A0A087X1C5 515 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 MPHOSPH10O00566 681 aaKnown RBP22.93■■□□□ 1.26
VPS35-202ENST00000561713 ATP5JP18859 108 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 CNGA1P29973 690 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 ATP2B2Q01814 1243 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 TSHZ3Q63HK5 1081 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 LBX2Q6XYB7 198 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 NPLOC4Q8TAT6 608 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 DYNLL2Q96FJ2 89 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 HAUS7Q99871 368 aa22.93■■□□□ 1.26
VPS35-202ENST00000561713 CHMP4BQ9H444 224 aaKnown RBP22.93■■□□□ 1.26
VPS35-202ENST00000561713 RPAP3Q9H6T3 665 aaPredicted RBP22.93■■□□□ 1.26
VPS35-202ENST00000561713 COL11A1P12107 1806 aaPredicted RBP22.93■■□□□ 1.26
VPS35-202ENST00000561713 SPDYE16A6NNV3 312 aaPredicted RBP22.92■■□□□ 1.26
VPS35-202ENST00000561713 HOXC6P09630 235 aa22.92■■□□□ 1.26
VPS35-202ENST00000561713 CYP2C19P33261 490 aa22.92■■□□□ 1.26
VPS35-202ENST00000561713 ATN1P54259 1190 aaPredicted RBP22.92■■□□□ 1.26
VPS35-202ENST00000561713 GRB14Q14449 540 aa22.92■■□□□ 1.26
VPS35-202ENST00000561713 TRPV1Q8NER1 839 aa22.92■■□□□ 1.26
VPS35-202ENST00000561713 IVNS1ABPQ9Y6Y0 642 aa22.92■■□□□ 1.26
VPS35-202ENST00000561713 LPAR1Q92633 364 aa22.91■■□□□ 1.26
VPS35-202ENST00000561713 CABP5Q9NP86 173 aa22.91■■□□□ 1.26
VPS35-202ENST00000561713 VCANP13611 3396 aa22.9■■□□□ 1.26
VPS35-202ENST00000561713 GREB1LQ9C091 1923 aaPredicted RBP22.9■■□□□ 1.26
VPS35-202ENST00000561713 POTEB2H3BUK9 544 aa22.89■■□□□ 1.25
VPS35-202ENST00000561713 MSCO60682 206 aa22.89■■□□□ 1.25
VPS35-202ENST00000561713 IGHA2P01877 340 aa22.89■■□□□ 1.25
VPS35-202ENST00000561713 LBHD1Q9BQE6 289 aaPredicted RBP22.89■■□□□ 1.25
VPS35-202ENST00000561713 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.89■■□□□ 1.25
VPS35-202ENST00000561713 A0A1W2PRG0 241 aa22.88■■□□□ 1.25
VPS35-202ENST00000561713 DNM1LO00429 736 aa22.88■■□□□ 1.25
VPS35-202ENST00000561713 AKR1B1P15121 316 aa22.88■■□□□ 1.25
VPS35-202ENST00000561713 CYBAP13498 195 aa22.87■■□□□ 1.25
VPS35-202ENST00000561713 GJC2Q5T442 439 aaPredicted RBP22.87■■□□□ 1.25
VPS35-202ENST00000561713 DPP9Q86TI2 863 aa22.87■■□□□ 1.25
VPS35-202ENST00000561713 FAM161BQ96MY7 647 aa22.87■■□□□ 1.25
VPS35-202ENST00000561713 GUCD1Q96NT3 240 aa22.87■■□□□ 1.25
VPS35-202ENST00000561713 MOV10L1Q9BXT6 1211 aaKnown RBP22.87■■□□□ 1.25
VPS35-202ENST00000561713 PUS7LQ9H0K6 701 aaKnown RBP22.87■■□□□ 1.25
VPS35-202ENST00000561713 ADORA2AP29274 412 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 RTP1P59025 263 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 COG2Q14746 738 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 KIAA1755Q5JYT7 1200 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 FAM109BQ6ICB4 259 aaPredicted RBP22.86■■□□□ 1.25
VPS35-202ENST00000561713 ZNF236Q9UL36 1845 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 MYH4Q9Y623 1939 aa22.86■■□□□ 1.25
VPS35-202ENST00000561713 CDH23Q9H251 3354 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 ANO1Q5XXA6 986 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 TANGO6Q9C0B7 1094 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 ECHDC1Q9NTX5 307 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 HOXC10Q9NYD6 342 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 PRKAG2Q9UGJ0 569 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 ATP11BQ9Y2G3 1177 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 SLC4A4Q9Y6R1 1079 aa22.85■■□□□ 1.25
VPS35-202ENST00000561713 USP17L12C9JPN9 530 aa22.84■■□□□ 1.25
VPS35-202ENST00000561713 USP17L21D6R901 530 aa22.84■■□□□ 1.25
VPS35-202ENST00000561713 UBE3CQ15386 1083 aa22.84■■□□□ 1.25
VPS35-202ENST00000561713 OLFML2BQ68BL8 750 aa22.84■■□□□ 1.25
VPS35-202ENST00000561713 SPATC1LQ9H0A9 340 aa22.84■■□□□ 1.25
VPS35-202ENST00000561713 PRUNE2Q8WUY3 3088 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 STRNO43815 780 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 COBLO75128 1261 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 ERCC3P19447 782 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 ICA1Q05084 483 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 TMEM179Q6ZVK1 233 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 SPICE1Q8N0Z3 855 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 ARRDC4Q8NCT1 418 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 DCTPP1Q9H773 170 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 ATP8A2Q9NTI2 1148 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 SWAP70Q9UH65 585 aa22.83■■□□□ 1.25
VPS35-202ENST00000561713 ZNFX1Q9P2E3 1918 aaKnown RBP22.82■■□□□ 1.24
VPS35-202ENST00000561713 CDK8P49336 464 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms