RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-218	ENST00000560541	TBC1D8	O95759	1140 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CYP7A1	P22680	504 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	MAP2K2	P36507	400 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CCT6A	P40227	531 aa	Known RBP	12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	ZNF174	Q15697	407 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	SUSD4	Q5VX71	490 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	RPAIN	Q86UA6	219 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	PARD6B	Q9BYG5	372 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CWC15	Q9P013	229 aa	Known RBP	12.83	□□□□□ -0.36
CUX1-218	ENST00000560541		V9GY48	417 aa	Predicted RBP	12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	SYNRG	Q9UMZ2	1314 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CCDC196	A0A1B0GTZ2	297 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	LMAN1	P49257	510 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	BLZF1	Q9H2G9	400 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	CEP131	Q9UPN4	1083 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541	SHANK3	Q9BYB0	1731 aa		12.83	□□□□□ -0.36
CUX1-218	ENST00000560541		A0A1B0GTH6	734 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	GOLGA6L9	A6NEM1	432 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	CCDC175	P0C221	793 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	NBPF20	Q3BBV1	942 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	PPFIBP1	Q86W92	1011 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	EVX2	Q03828	476 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	APTX	Q7Z2E3	356 aa	Known RBP	12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	CEP120	Q8N960	986 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	ANKRD20A12P	Q8NF67	263 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	PAGE5	Q96GU1	130 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	CHD4	Q14839	1912 aa		12.82	□□□□□ -0.36
CUX1-218	ENST00000560541	LRP6	O75581	1613 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	OAS2	P29728	719 aa	Known RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	CASP14	P31944	242 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ATP6V1A	P38606	617 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	DPYD	Q12882	1025 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	TRIML1	Q8N9V2	468 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ZNF579	Q8NAF0	562 aa	Known RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	BTG4	Q9NY30	223 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ABL1	P00519	1130 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	CDC25A	P30304	524 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	KANK3	Q6NY19	840 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	GPR161	Q8N6U8	529 aa	Known RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ENAH	Q8N8S7	591 aa	Predicted RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	CTNND2	Q9UQB3	1225 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	MYH3	P11055	1940 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	KRT2	P35908	639 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	PKN1	Q16512	942 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	SKIDA1	Q1XH10	827 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	RSRC2	Q7L4I2	434 aa	Known RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	SPATA20	Q8TB22	786 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ARFGAP3	Q9NP61	516 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	MAPK8IP1	Q9UQF2	711 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	ADGRG1	Q9Y653	693 aa		12.81	□□□□□ -0.36
CUX1-218	ENST00000560541	TPM1	P09493	284 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	ERCC5	P28715	1186 aa	Predicted RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	DYNLL1	P63167	89 aa	Known RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	GPS2	Q13227	327 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	ZNF569	Q5MCW4	686 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	SPATA1	Q5VX52	437 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	ACRBP	Q8NEB7	543 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	GOLGA1	Q92805	767 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	RNF41	Q9H4P4	317 aa	Predicted RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	SOS2	Q07890	1332 aa	Predicted RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	GNAT2	P19087	354 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	GYG1	P46976	350 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	FXR1	P51114	621 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	CUL4B	Q13620	913 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	SMC1A	Q14683	1233 aa	Known RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	SLC4A8	Q2Y0W8	1093 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	TTC19	Q6DKK2	380 aa	Predicted RBP	12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	ZNF34	Q8IZ26	560 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	ESR2	Q92731	530 aa		12.8	□□□□□ -0.36
CUX1-218	ENST00000560541	PNPLA7	Q6ZV29	1317 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	SEC23A	Q15436	765 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	IFIT1B	Q5T764	474 aa	Known RBP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	TMTC2	Q8N394	836 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	CDC5L	Q99459	802 aa	Known RBP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	RNF26	Q9BY78	433 aa	Predicted RBP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	VPS16	Q9H269	839 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	AATF	Q9NY61	560 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	ADD3	Q9UEY8	706 aa	Known RBP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	SLIT2	O94813	1529 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	NMT2	O60551	498 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	XBP1	P17861	261 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	SCP2	P22307	547 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	CHMP4BP1	P59074	171 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	CHRND	Q07001	517 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	FOXR1	Q6PIV2	292 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	SLC24A3	Q9HC58	644 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	SLAIN2	Q9P270	581 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	NID2	Q14112	1375 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	MAGEB6P1	A0A0J9YX57	407 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	PPP1R3G	B7ZBB8	358 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	KIF5C	O60282	957 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	MFAP3L	O75121	409 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	GYPC	P04921	128 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	IGHMBP2	P38935	993 aa	Known RBP	12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	PTGDR	Q13258	359 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	KIF4B	Q2VIQ3	1234 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	PANX2	Q96RD6	677 aa		12.79	□□□□□ -0.36
CUX1-218	ENST00000560541	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms