RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 KIF23Q02241 960 aaPredicted RBP20.58■□□□□ 0.89
SNX1-208ENST00000559844 CEBPZQ03701 1054 aaKnown RBP20.58■□□□□ 0.89
SNX1-208ENST00000559844 MAP3K11Q16584 847 aa20.58■□□□□ 0.89
SNX1-208ENST00000559844 FUCA2Q9BTY2 467 aa20.58■□□□□ 0.89
SNX1-208ENST00000559844 DACT1Q9NYF0 836 aa20.58■□□□□ 0.89
SNX1-208ENST00000559844 SIPA1L1O43166 1804 aa20.58■□□□□ 0.88
SNX1-208ENST00000559844 COL2A1P02458 1487 aaPredicted RBP20.57■□□□□ 0.88
SNX1-208ENST00000559844 KIF3CO14782 793 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 YEATS4O95619 227 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 CLSTN2Q9H4D0 955 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.57■□□□□ 0.88
SNX1-208ENST00000559844 DDTLA6NHG4 134 aaPredicted RBP20.57■□□□□ 0.88
SNX1-208ENST00000559844 RANBP6O60518 1105 aaKnown RBP20.57■□□□□ 0.88
SNX1-208ENST00000559844 POLR3DP05423 398 aaPredicted RBP20.57■□□□□ 0.88
SNX1-208ENST00000559844 MYSM1Q5VVJ2 828 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 KRT40Q6A162 431 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 SH3BP5LQ7L8J4 393 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 CDAN1Q8IWY9 1227 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 AMOTL1Q8IY63 956 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 RNF214Q8ND24 703 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 PHKBQ93100 1093 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 SLC26A6Q9BXS9 759 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 GLIS2Q9BZE0 524 aaPredicted RBP20.57■□□□□ 0.88
SNX1-208ENST00000559844 TNMDQ9H2S6 317 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 POLR3EQ9NVU0 708 aa20.57■□□□□ 0.88
SNX1-208ENST00000559844 ATRNL1Q5VV63 1379 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 CYP2D7A0A087X1C5 515 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 CCDC192P0DO97 292 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 CYP2D6P10635 497 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 PDE4BQ07343 736 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 PRAMEF18Q5VWM3 479 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 FANCBQ8NB91 859 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 DHX36Q9H2U1 1008 aaKnown RBP20.56■□□□□ 0.88
SNX1-208ENST00000559844 PPP2R3BQ9Y5P8 575 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 MYH8P13535 1937 aa20.56■□□□□ 0.88
SNX1-208ENST00000559844 CALM1P0DP23 149 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 CALM2P0DP24 149 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 CALM3P0DP25 149 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 DLK2Q6UY11 383 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 KCNG4Q8TDN1 519 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 TEPSINQ96N21 525 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 CSRNP1Q96S65 589 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 EVX2Q03828 476 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 IFIT1BQ5T764 474 aaKnown RBP20.55■□□□□ 0.88
SNX1-208ENST00000559844 CATIPQ7Z7H3 387 aa20.55■□□□□ 0.88
SNX1-208ENST00000559844 DEXIO95424 95 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 HLA-DOAP06340 250 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 PLCD1P51178 756 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 GNL2Q13823 731 aaKnown RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 STK38Q15208 465 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 CHADLQ6NUI6 762 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 CCDC73Q6ZRK6 1079 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 RBM43Q6ZSC3 357 aaKnown RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 CCAR1Q8IX12 1150 aaKnown RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 ENAHQ8N8S7 591 aaPredicted RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 NUP133Q8WUM0 1156 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 PDLIM2Q96JY6 352 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 FTOQ9C0B1 505 aaKnown RBP eCLIP20.54■□□□□ 0.88
SNX1-208ENST00000559844 RBM28Q9NW13 759 aaKnown RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 KIF28PB7ZC32 967 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 SMIM22K7EJ46 135 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 ME1P48163 572 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 C12orf60Q5U649 245 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 CRACR2BQ8N4Y2 399 aaPredicted RBP20.54■□□□□ 0.88
SNX1-208ENST00000559844 LINC00301Q8NCQ3 95 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 AIFM3Q96NN9 605 aa20.54■□□□□ 0.88
SNX1-208ENST00000559844 CTAGE5O15320 804 aa20.53■□□□□ 0.88
SNX1-208ENST00000559844 NR1I2O75469 434 aa20.53■□□□□ 0.88
SNX1-208ENST00000559844 DDAH1O94760 285 aa20.53■□□□□ 0.88
SNX1-208ENST00000559844 SF3A1Q15459 793 aaKnown RBP20.53■□□□□ 0.88
SNX1-208ENST00000559844 NBPF12Q5TAG4 269 aaPredicted RBP20.53■□□□□ 0.88
SNX1-208ENST00000559844 GJB4Q9NTQ9 266 aa20.53■□□□□ 0.88
SNX1-208ENST00000559844 PI4KBQ9UBF8 816 aa20.53■□□□□ 0.88
SNX1-208ENST00000559844 A0A1W2PQ27 194 aa20.52■□□□□ 0.88
SNX1-208ENST00000559844 A0A1W2PQ64 194 aa20.52■□□□□ 0.88
SNX1-208ENST00000559844 A0A1W2PQD8 194 aa20.52■□□□□ 0.88
SNX1-208ENST00000559844 ADALQ6DHV7 355 aa20.52■□□□□ 0.88
SNX1-208ENST00000559844 NBPF11Q86T75 865 aa20.52■□□□□ 0.88
SNX1-208ENST00000559844 PRDM1O75626 825 aa20.52■□□□□ 0.87
SNX1-208ENST00000559844 U2AF2P26368 475 aaKnown RBP eCLIP20.52■□□□□ 0.874e-14■■■■□ 21.1
SNX1-208ENST00000559844 SAFBQ15424 915 aaKnown RBP eCLIP20.52■□□□□ 0.87
SNX1-208ENST00000559844 CAMK4Q16566 473 aa20.52■□□□□ 0.87
SNX1-208ENST00000559844 ANO1Q5XXA6 986 aa20.52■□□□□ 0.87
SNX1-208ENST00000559844 CDCA5Q96FF9 252 aa20.52■□□□□ 0.87
SNX1-208ENST00000559844 RNF26Q9BY78 433 aaPredicted RBP20.52■□□□□ 0.87
SNX1-208ENST00000559844 CLIC4Q9Y696 253 aa20.52■□□□□ 0.87
SNX1-208ENST00000559844 TRAF5O00463 557 aa20.51■□□□□ 0.87
SNX1-208ENST00000559844 SPTLC2O15270 562 aa20.51■□□□□ 0.87
SNX1-208ENST00000559844 SERPINB13Q9UIV8 391 aa20.51■□□□□ 0.87
SNX1-208ENST00000559844 PCDHA7Q9UN72 937 aa20.51■□□□□ 0.87
SNX1-208ENST00000559844 ROBO3Q96MS0 1386 aa20.51■□□□□ 0.87
SNX1-208ENST00000559844 FAM196BA6NMK8 535 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 SLURP2P0DP57 97 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 FAM160A1Q05DH4 1040 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 HS1BP3Q53T59 392 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 MRPS27Q92552 414 aaKnown RBP20.5■□□□□ 0.87
SNX1-208ENST00000559844 DYNLL2Q96FJ2 89 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 AKAP17AQ02040 695 aaKnown RBP20.5■□□□□ 0.87
SNX1-208ENST00000559844 SUPT20HL1Q3ZLR7 823 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 CCDC178Q5BJE1 867 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms