RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 C16orf86Q6ZW13 317 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 PLEKHH3Q7Z736 793 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 SPICE1Q8N0Z3 855 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 KBTBD3Q8NAB2 608 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 NPLOC4Q8TAT6 608 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 PI4K2BQ8TCG2 481 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 STRBPQ96SI9 672 aaKnown RBP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 NUDT12Q9BQG2 462 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 CHMP4BQ9H444 224 aaKnown RBP13.15□□□□□ -0.3
SYNE2-227ENST00000557307 RABGAP1Q9Y3P9 1069 aa13.15□□□□□ -0.3
SYNE2-227ENST00000557307 SALL3Q9BXA9 1300 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 GSG1L2A8MUP6 293 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 MAPK4P31152 587 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 ICA1Q05084 483 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 LBX2Q6XYB7 198 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 TMEM179Q6ZVK1 233 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 SOCS4Q8WXH5 440 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 TANGO6Q9C0B7 1094 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 SWAP70Q9UH65 585 aa13.14□□□□□ -0.31
SYNE2-227ENST00000557307 RPTORQ8N122 1335 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 LAMA3Q16787 3333 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 ROBO3Q96MS0 1386 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 EEF2P13639 858 aaKnown RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 ZKSCAN1P17029 563 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 MAP2K5Q13163 448 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 WDR78Q5VTH9 848 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 ATG4CQ96DT6 458 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 YTHDC1Q96MU7 727 aaKnown RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 APBA2Q99767 749 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 MOV10L1Q9BXT6 1211 aaKnown RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 PRO3102Q9H379 93 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 HMX1Q9NP08 348 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 FBXO28Q9NVF7 368 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 RBM27Q9P2N5 1060 aaKnown RBP13.13□□□□□ -0.31
SYNE2-227ENST00000557307 TMX2Q9Y320 296 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 PFASO15067 1338 aa13.13□□□□□ -0.31
SYNE2-227ENST00000557307 LTBP2Q14767 1821 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 FOXP2O15409 715 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 RNF113AO15541 343 aaKnown RBP13.12□□□□□ -0.31
SYNE2-227ENST00000557307 GPAA1O43292 621 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 XRCC5P13010 732 aaKnown RBP13.12□□□□□ -0.31
SYNE2-227ENST00000557307 RASA1P20936 1047 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 PTPREP23469 700 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 RGS2P41220 211 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 GRB14Q14449 540 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
SYNE2-227ENST00000557307 TRPV1Q8NER1 839 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 APPBP2Q92624 585 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 GCC1Q96CN9 775 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 VCPKMTQ9H867 229 aa13.12□□□□□ -0.31
SYNE2-227ENST00000557307 MCM3APO60318 1980 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 IGHA2P01877 340 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 DSG3P32926 999 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 ATP2B2Q01814 1243 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 LHX8Q68G74 356 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 CCDC129Q6ZRS4 1044 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 GTF3C2Q8WUA4 911 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-227ENST00000557307 NUP88Q99567 741 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-227ENST00000557307 ARPP21Q9UBL0 812 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-227ENST00000557307 OGDHLQ9ULD0 1010 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 TACC3Q9Y6A5 838 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 LCTP09848 1927 aa13.11□□□□□ -0.31
SYNE2-227ENST00000557307 MINDY4BA8MYZ0 360 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 PRDM1O75626 825 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 CYP2C19P33261 490 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 ZSCAN25Q6NSZ9 544 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 CCAR1Q8IX12 1150 aaKnown RBP13.1□□□□□ -0.31
SYNE2-227ENST00000557307 HTATIP2Q9BUP3 242 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 SPATC1LQ9H0A9 340 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 ARHGEF10LQ9HCE6 1279 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 CWC22Q9HCG8 908 aaKnown RBP13.1□□□□□ -0.31
SYNE2-227ENST00000557307 LRRC37A2A6NM11 1700 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 SMCHD1A6NHR9 2005 aa13.1□□□□□ -0.31
SYNE2-227ENST00000557307 LAMA4Q16363 1823 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 SLC15A5A6NIM6 579 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 COBLO75128 1261 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 FLOT1O75955 427 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 ERCC3P19447 782 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 ADORA2AP29274 412 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 COG2Q14746 738 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 TMEM132BQ14DG7 1078 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 SBK1Q52WX2 424 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 FAM83BQ5T0W9 1011 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 C7orf61Q8IZ16 206 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 ZMYND8Q9ULU4 1186 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-227ENST00000557307 TTC41PQ6P2S7 1318 aa13.09□□□□□ -0.31
SYNE2-227ENST00000557307 IGKV6D-41A0A0C4DH26 115 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 WDR46O15213 610 aaKnown RBP13.08□□□□□ -0.32
SYNE2-227ENST00000557307 EVI5O60447 810 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 HOXC6P09630 235 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 COL6A1P12109 1028 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 SYN1P17600 705 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 MX1P20591 662 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 CCNA1P78396 465 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 PLS1Q14651 629 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 ANO1Q5XXA6 986 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 RASGRP2Q7LDG7 609 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 NECAB2Q7Z6G3 386 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 ANKLE1Q8NAG6 615 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms