RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 PWP2Q15269 919 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 ZMYM1Q5SVZ6 1142 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 GPKOWQ92917 476 aaPredicted RBP eCLIP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC51Q96ER9 411 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 EIF3CQ99613 913 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PUS7LQ9H0K6 701 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 HDAC6Q9UBN7 1215 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 SWAP70Q9UH65 585 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 RCOR1Q9UKL0 485 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PTPRMP28827 1452 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CPS1P31327 1500 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 SLC39A14Q15043 492 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 SPATA1Q5VX52 437 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC50Q8IVM0 306 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 ZSCAN29Q8IWY8 852 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 FMR1NBQ8N0W7 255 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 DDX17Q92841 729 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 EXOC4Q96A65 974 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PAGE5Q96GU1 130 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 WDR24Q96S15 920 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 KRT12Q99456 494 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 JPH2Q9BR39 696 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 EFCC1Q9HA90 598 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 A0A0G2JLW4 131 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 NUTM2BA6NNL0 878 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 NUTM2EB1AL46 878 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 RPSAP08865 295 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PPP1R7Q15435 360 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CABP7Q86V35 215 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 SYCP3Q8IZU3 236 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 BCAS4Q8TDM0 211 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 NUP58Q9BVL2 599 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 MED4Q9NPJ6 270 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PRR36Q9H6K5 1346 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 ROBO2Q9HCK4 1378 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 SH2B2O14492 632 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 N4BP1O75113 896 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 HOXB7P09629 217 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 RASSF7Q02833 373 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PAK2Q13177 524 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 MTF1Q14872 753 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 E4F1Q66K89 784 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 CNNM4Q6P4Q7 775 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 CYB5R4Q7L1T6 521 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 FBF1Q8TES7 1133 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 ACSBG1Q96GR2 724 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 LRRC27Q9C0I9 530 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 NHEJ1Q9H9Q4 299 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 SERPINA10Q9UK55 444 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PCDHB6Q9Y5E3 794 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PNPLA6Q8IY17 1366 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 BTBD18B2RXH4 712 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 CEP104O60308 925 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 GBP1P32455 592 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 CTNNA1P35221 906 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 SFMBT2Q5VUG0 894 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 GSTA5Q7RTV2 222 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 RPAINQ86UA6 219 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 STMN4Q9H169 189 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 IGSF1Q8N6C5 1336 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TBCAO75347 108 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 A1BGP04217 495 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TXKP42681 527 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PUM3Q15397 648 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 CFAP221Q4G0U5 840 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TRIM68Q6AZZ1 485 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 KSR1Q8IVT5 923 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 NELFCDQ8IXH7 590 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 LMBR1Q8WVP7 490 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 ZSCAN10Q96SZ4 725 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 C6orf50Q9HD87 102 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 BIN2Q9UBW5 565 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PCDHA5Q9Y5H7 936 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TAF6LQ9Y6J9 622 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 DZIP3Q86Y13 1208 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 ZNF526Q8TF50 670 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 SIRT1Q96EB6 747 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 SPAG5Q96R06 1193 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 PANX2Q96RD6 677 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TACO1Q9BSH4 297 aaKnown RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 OSBPL5Q9H0X9 879 aaPredicted RBP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 AATFQ9NY61 560 aaKnown RBP eCLIP5.55□□□□□ -1.52
SYNE2-223ENST00000557005 HYOU1Q9Y4L1 999 aa5.55□□□□□ -1.52
SYNE2-223ENST00000557005 TUBBP07437 444 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 MAGEA9P43362 315 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 TNNI2P48788 182 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 IFT88Q13099 833 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC6Q16204 474 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 ARHGAP31Q2M1Z3 1444 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 PI16Q6UXB8 463 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 IFNL3Q8IZI9 196 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 MCM9Q9NXL9 1143 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 STX8Q9UNK0 236 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 ANKRD26Q9UPS8 1709 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 NRXN1Q9ULB1 1477 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 MAP2P11137 1827 aaKnown RBP5.54□□□□□ -1.52
SYNE2-223ENST00000557005 MFAP3LO75121 409 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 MMP1P03956 469 aa5.54□□□□□ -1.52
SYNE2-223ENST00000557005 PARP1P09874 1014 aaKnown RBP5.54□□□□□ -1.52
SYNE2-223ENST00000557005 NNTQ13423 1086 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms