RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ANO1Q5XXA6 986 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 SHCBP1Q8NEM2 672 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 RIOK1Q9BRS2 568 aaKnown RBP15.37■□□□□ 0.05
SHMT2-223ENST00000556689 TANGO6Q9C0B7 1094 aa15.37■□□□□ 0.05
SHMT2-223ENST00000556689 MAGEB6P1A0A0J9YX57 407 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 COBLO75128 1261 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 MB21D1Q8N884 522 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 BADQ92934 168 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 CDX2Q99626 313 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-223ENST00000556689 SEMA6BQ9H3T3 888 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 MROH8Q9H579 483 aa15.36■□□□□ 0.05
SHMT2-223ENST00000556689 PRDM5Q9NQX1 630 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-223ENST00000556689 MAST2Q6P0Q8 1798 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 ADCYAP1R1P41586 468 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 PLS1Q14651 629 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 TTF1Q15361 905 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-223ENST00000556689 TRIM60Q495X7 471 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 PRAMEF19Q5SWL8 479 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 C9orf50Q5SZB4 431 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 SLC9C2Q5TAH2 1124 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 DIEXFQ68CQ4 756 aaKnown RBP15.35■□□□□ 0.05
SHMT2-223ENST00000556689 AACSQ86V21 672 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 NCAPG2Q86XI2 1143 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 FTSJ3Q8IY81 847 aaKnown RBP15.35■□□□□ 0.05
SHMT2-223ENST00000556689 ABRAQ8N0Z2 381 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 CRNKL1Q9BZJ0 848 aaKnown RBP15.35■□□□□ 0.05
SHMT2-223ENST00000556689 MCM9Q9NXL9 1143 aa15.35■□□□□ 0.05
SHMT2-223ENST00000556689 FOCADQ5VW36 1801 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 DSG3P32926 999 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 SNX17Q15036 470 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 LRRC41Q15345 812 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 C1orf53Q5VUE5 145 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 TMEM179Q6ZVK1 233 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 ERC1Q8IUD2 1116 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 ITPRIPQ8IWB1 547 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 FERMT2Q96AC1 680 aa15.34■□□□□ 0.05
SHMT2-223ENST00000556689 CDK5RAP2Q96SN8 1893 aa15.33■□□□□ 0.05
SHMT2-223ENST00000556689 CCER2I3L3R5 266 aa15.33■□□□□ 0.04
SHMT2-223ENST00000556689 FCER1AP12319 257 aa15.33■□□□□ 0.04
SHMT2-223ENST00000556689 SMAD3P84022 425 aaKnown RBP15.33■□□□□ 0.04
SHMT2-223ENST00000556689 KIAA1755Q5JYT7 1200 aa15.33■□□□□ 0.04
SHMT2-223ENST00000556689 PDLIM7Q9NR12 457 aa15.33■□□□□ 0.04
SHMT2-223ENST00000556689 TACC3Q9Y6A5 838 aa15.33■□□□□ 0.04
SHMT2-223ENST00000556689 EYSQ5T1H1 3165 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 TRIM43BA6NCK2 446 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 FLOT1O75955 427 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 SLC25A27O95847 323 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 PDE6AP16499 860 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 EVX2Q03828 476 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 SH3RF1Q7Z6J0 888 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 MAFAQ8NHW3 353 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-223ENST00000556689 TRIM43Q96BQ3 446 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-223ENST00000556689 ATG4CQ96DT6 458 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 MAML3Q96JK9 1138 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 ARHGEF10LQ9HCE6 1279 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 DCP1AQ9NPI6 582 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-223ENST00000556689 SWAP70Q9UH65 585 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 EXOC6BQ9Y2D4 811 aa15.32■□□□□ 0.04
SHMT2-223ENST00000556689 MYH1P12882 1939 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 RARBP10826 455 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 TLE2Q04725 743 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 HSP90AB4PQ58FF6 505 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 FAM47AQ5JRC9 791 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 CEP85Q6P2H3 762 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 SAMD1Q6SPF0 538 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-223ENST00000556689 SIAH1Q8IUQ4 282 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 SPICE1Q8N0Z3 855 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 SDR42E1Q8WUS8 393 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 SH2D4AQ9H788 454 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 NRBP1Q9UHY1 535 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 TMX2Q9Y320 296 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 MYO5AQ9Y4I1 1855 aaKnown RBP15.31■□□□□ 0.04
SHMT2-223ENST00000556689 CUL9Q8IWT3 2517 aa15.31■□□□□ 0.04
SHMT2-223ENST00000556689 VCANP13611 3396 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 CYP2D6P10635 497 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 RLBP1P12271 317 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 TMEM132BQ14DG7 1078 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 RNF180Q86T96 592 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 SLC44A5Q8NCS7 719 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 MYLIPQ8WY64 445 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 DYNLL2Q96FJ2 89 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 CCDC17Q96LX7 622 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 MMP19Q99542 508 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 TTYH1Q9H313 450 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-223ENST00000556689 VCPKMTQ9H867 229 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 ZNF532Q9HCE3 1301 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 IL1RAPL2Q9NP60 686 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 XPNPEP3Q9NQH7 507 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 PHF24Q9UPV7 400 aa15.3■□□□□ 0.04
SHMT2-223ENST00000556689 TCRBV5S4A2TA0A5A2 114 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 WDR46O15213 610 aaKnown RBP15.29■□□□□ 0.04
SHMT2-223ENST00000556689 ICA1Q05084 483 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 LCORLQ8N3X6 602 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 RHPN1Q8TCX5 695 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 ATP8A2Q9NTI2 1148 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 ADAMTS5Q9UNA0 930 aa15.29■□□□□ 0.04
SHMT2-223ENST00000556689 DIS3Q9Y2L1 958 aaKnown RBP15.29■□□□□ 0.04
SHMT2-223ENST00000556689 PRUNE2Q8WUY3 3088 aa15.28■□□□□ 0.04
SHMT2-223ENST00000556689 GOLIM4O00461 696 aa15.28■□□□□ 0.04
SHMT2-223ENST00000556689 PGK1P00558 417 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms