RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ATP2B2Q01814 1243 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 TTC22Q5TAA0 569 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 CCAR1Q8IX12 1150 aaKnown RBP24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 SLAIN1Q8ND83 568 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 ANAPC4Q9UJX5 808 aa24.53■■□□□ 1.52
CCDC88C-210ENST00000555995 ECM2O94769 699 aaPredicted RBP24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 TSPY3P0CV98 308 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 TSPY8P0CW00 308 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 GRK4P32298 578 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 SOX10P56693 466 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 PRKCZQ05513 592 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 IRF5Q13568 498 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 STK11IPQ8N1F8 1099 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 ZNF333Q96JL9 665 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 HOXC10Q9NYD6 342 aa24.52■■□□□ 1.52
CCDC88C-210ENST00000555995 FOXP2O15409 715 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 HSPD1P10809 573 aaKnown RBP24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 PDE4AP27815 886 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 COG2Q14746 738 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 CLEC10AQ8IUN9 316 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 MB21D1Q8N884 522 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 PAGR1Q9BTK6 254 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 RBPJLQ9UBG7 517 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 A0A0G2JMZ2 1700 aa24.51■■□□□ 1.51
CCDC88C-210ENST00000555995 LAMA4Q16363 1823 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 PARP14Q460N5 1801 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 PRDM1O75626 825 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 PCP11498 1178 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 VPS53Q5VIR6 699 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 SIAH1Q8IUQ4 282 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 NEDD1Q8NHV4 660 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 PXYLP1Q8TE99 480 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 SOCS4Q8WXH5 440 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 TMEM106CQ9BVX2 250 aa24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 CWC22Q9HCG8 908 aaKnown RBP24.5■■□□□ 1.51
CCDC88C-210ENST00000555995 IGKV6D-41A0A0C4DH26 115 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 SPDYE16A6NNV3 312 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 FLT3LGP49771 235 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 NT5C2P49902 561 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 UBXN2AP68543 259 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 CENPQQ7L2Z9 268 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 ZNF589Q86UQ0 364 aaPredicted RBP24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 TXNRD2Q9NNW7 524 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 RAD50Q92878 1312 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 HTTP42858 3142 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 DOCK3Q8IZD9 2030 aa24.49■■□□□ 1.51
CCDC88C-210ENST00000555995 FLOT1O75955 427 aa24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 TTLL1O95922 423 aa24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 FGAP02671 866 aa24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 MLLT1Q03111 559 aaPredicted RBP24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 CWC27Q6UX04 472 aaKnown RBP24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.48■■□□□ 1.51
CCDC88C-210ENST00000555995 RLFQ13129 1914 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 TSPY2A6NKD2 308 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 ORC4O43929 436 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 ADCY3O60266 1144 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 SPICE1Q8N0Z3 855 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 RUFY2Q8WXA3 655 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 MTMR4Q9NYA4 1195 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 GABRQQ9UN88 632 aa24.47■■□□□ 1.51
CCDC88C-210ENST00000555995 GSPT1P15170 499 aaKnown RBP24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 TFAP4Q01664 338 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 CTDSPL2Q05D32 466 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 SH3TC2Q8TF17 1288 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 MKL1Q969V6 931 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 CEP95Q96GE4 821 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 NUDT12Q9BQG2 462 aa24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 RNF41Q9H4P4 317 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 BIN2Q9UBW5 565 aaPredicted RBP24.46■■□□□ 1.51
CCDC88C-210ENST00000555995 RAD21O60216 631 aa24.45■■□□□ 1.5
CCDC88C-210ENST00000555995 DSG3P32926 999 aa24.45■■□□□ 1.5
CCDC88C-210ENST00000555995 TRMT44Q8IYL2 757 aaKnown RBP24.45■■□□□ 1.5
CCDC88C-210ENST00000555995 DSCC1Q9BVC3 393 aa24.45■■□□□ 1.5
CCDC88C-210ENST00000555995 CLIP2Q9UDT6 1046 aa24.45■■□□□ 1.5
CCDC88C-210ENST00000555995 NEFLP07196 543 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 FGRP09769 529 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 PLEKHH3Q7Z736 793 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 GMCL1P1Q8NEA9 526 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 CTNNA3Q9UI47 895 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 IVNS1ABPQ9Y6Y0 642 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 PLXNB2O15031 1838 aa24.44■■□□□ 1.5
CCDC88C-210ENST00000555995 F5H6K3 240 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 RANBP6O60518 1105 aaKnown RBP24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 CNMDO75829 334 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 KLRC3Q07444 240 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 FAM47AQ5JRC9 791 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 KIAA1755Q5JYT7 1200 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 GPR142Q7Z601 462 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 TOMM22Q9NS69 142 aa24.43■■□□□ 1.5
CCDC88C-210ENST00000555995 ZNF236Q9UL36 1845 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 ZNF213O14771 459 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 XRCC5P13010 732 aaKnown RBP24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 CAPN2P17655 700 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 RGS2P41220 211 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 Q3C1V9 767 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 SHCBP1Q8NEM2 672 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 NKX2-3Q8TAU0 364 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 STAG1Q8WVM7 1258 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 PORCNQ9H237 461 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms