RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CWC22Q9HCG8 908 aaKnown RBP7.13□□□□□ -1.27
SCFD1-216ENST00000555550 GPR160Q9UJ42 338 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 KCNH3Q9ULD8 1083 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 EIF4BP23588 611 aaKnown RBP7.12□□□□□ -1.27
SCFD1-216ENST00000555550 LIG3P49916 1009 aa7.12□□□□□ -1.27
SCFD1-216ENST00000555550 NR0B2Q15466 257 aa7.12□□□□□ -1.27
SCFD1-216ENST00000555550 PANK1Q8TE04 598 aa7.12□□□□□ -1.27
SCFD1-216ENST00000555550 DHX38Q92620 1227 aaKnown RBP7.12□□□□□ -1.27
SCFD1-216ENST00000555550 RNF19AQ9NV58 838 aa7.12□□□□□ -1.27
SCFD1-216ENST00000555550 KCTD3Q9Y597 815 aa7.12□□□□□ -1.27
SCFD1-216ENST00000555550 TEX51A0A1B0GUA7 166 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 SEMA7AO75326 666 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 PLCG1P19174 1290 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 TFE3P19532 575 aaPredicted RBP7.11□□□□□ -1.27
SCFD1-216ENST00000555550 SSPNQ14714 243 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 TSNAXIP1Q2TAA8 658 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 SPPL2CQ8IUH8 684 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 MARCH10Q8NA82 808 aaPredicted RBP7.11□□□□□ -1.27
SCFD1-216ENST00000555550 SYTL4Q96C24 671 aaPredicted RBP7.11□□□□□ -1.27
SCFD1-216ENST00000555550 SHISA4Q96DD7 197 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 KCNC2Q96PR1 638 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 TRAIPQ9BWF2 469 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 JAG2Q9Y219 1238 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 TLR6Q9Y2C9 796 aa7.11□□□□□ -1.27
SCFD1-216ENST00000555550 RPL6Q02878 288 aaKnown RBP7.1□□□□□ -1.27
SCFD1-216ENST00000555550 ZNF385BQ569K4 471 aa7.1□□□□□ -1.27
SCFD1-216ENST00000555550 TCERG1LQ5VWI1 586 aa7.1□□□□□ -1.27
SCFD1-216ENST00000555550 FAM13CQ8NE31 585 aa7.1□□□□□ -1.27
SCFD1-216ENST00000555550 ADAM30Q9UKF2 790 aa7.1□□□□□ -1.27
SCFD1-216ENST00000555550 SHISA3A0PJX4 238 aa7.09□□□□□ -1.27
SCFD1-216ENST00000555550 PATL2C9JE40 543 aaKnown RBP7.09□□□□□ -1.27
SCFD1-216ENST00000555550 TRIM13O60858 407 aa7.09□□□□□ -1.27
SCFD1-216ENST00000555550 TEKQ02763 1124 aa7.09□□□□□ -1.27
SCFD1-216ENST00000555550 CYB5D2Q8WUJ1 264 aa7.09□□□□□ -1.27
SCFD1-216ENST00000555550 FRMD6Q96NE9 622 aa7.09□□□□□ -1.27
SCFD1-216ENST00000555550 EFEMP2O95967 443 aa7.08□□□□□ -1.28
SCFD1-216ENST00000555550 PDIA4P13667 645 aaKnown RBP7.08□□□□□ -1.28
SCFD1-216ENST00000555550 GNA15P30679 374 aa7.08□□□□□ -1.28
SCFD1-216ENST00000555550 SNX17Q15036 470 aa7.08□□□□□ -1.28
SCFD1-216ENST00000555550 AEBP1Q8IUX7 1158 aa7.08□□□□□ -1.28
SCFD1-216ENST00000555550 NOTOA8MTQ0 251 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 TNNI2P48788 182 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 CHRNEQ04844 493 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 NFIXQ14938 502 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 MEI1Q5TIA1 1274 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 RNF141Q8WVD5 230 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 LINC01599Q8WXQ3 324 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 AK5Q9Y6K8 562 aa7.07□□□□□ -1.28
SCFD1-216ENST00000555550 PI3P19957 117 aa7.06□□□□□ -1.28
SCFD1-216ENST00000555550 YARSP54577 528 aaKnown RBP7.06□□□□□ -1.28
SCFD1-216ENST00000555550 ADGRF1Q5T601 910 aa7.06□□□□□ -1.28
SCFD1-216ENST00000555550 ANKS4BQ8N8V4 417 aa7.06□□□□□ -1.28
SCFD1-216ENST00000555550 OR14I1A6ND48 311 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 CHURC1-FNTBB4DL54 471 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 SRSF3P84103 164 aaKnown RBP7.05□□□□□ -1.28
SCFD1-216ENST00000555550 DUSP4Q13115 394 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 CLEC16AQ2KHT3 1053 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 VMACQ2NL98 169 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 BNC2Q6ZN30 1099 aaPredicted RBP7.05□□□□□ -1.28
SCFD1-216ENST00000555550 KREMEN1Q96MU8 473 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 G6PC3Q9BUM1 346 aa7.05□□□□□ -1.28
SCFD1-216ENST00000555550 RBM47A0AV96 593 aaKnown RBP7.04□□□□□ -1.28
SCFD1-216ENST00000555550 OTOL1A6NHN0 477 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-216ENST00000555550 F6X3S4 739 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 RFXAPO00287 272 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 SYN1P17600 705 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 SDHBP21912 280 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 RPL10P27635 214 aaKnown RBP7.04□□□□□ -1.28
SCFD1-216ENST00000555550 XYLT2Q9H1B5 865 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 MBD1Q9UIS9 605 aaPredicted RBP7.04□□□□□ -1.28
SCFD1-216ENST00000555550 ZNF281Q9Y2X9 895 aa7.04□□□□□ -1.28
SCFD1-216ENST00000555550 USP2O75604 605 aaPredicted RBP7.03□□□□□ -1.28
SCFD1-216ENST00000555550 EPHB3P54753 998 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 TMEM201Q5SNT2 666 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 NLRX1Q86UT6 975 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 TMEM151BQ8IW70 566 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 ZDHHC14Q8IZN3 488 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 USHBP1Q8N6Y0 703 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 DUSP9Q99956 384 aaKnown RBP7.03□□□□□ -1.28
SCFD1-216ENST00000555550 SIRT5Q9NXA8 310 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 KLHL3Q9UH77 587 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 ZMYM5Q9UJ78 669 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 IRAK3Q9Y616 596 aa7.03□□□□□ -1.28
SCFD1-216ENST00000555550 PRPF40AO75400 957 aaKnown RBP7.02□□□□□ -1.29
SCFD1-216ENST00000555550 SASH1O94885 1247 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 SLFN12Q8IYM2 578 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 PHC3Q8NDX5 983 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 FEZF2Q8TBJ5 459 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 DACT3Q96B18 629 aaPredicted RBP7.02□□□□□ -1.29
SCFD1-216ENST00000555550 SIGLEC10Q96LC7 697 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 REV1Q9UBZ9 1251 aa7.02□□□□□ -1.29
SCFD1-216ENST00000555550 GRIN3BO60391 1043 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 CILPO75339 1184 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 AFF3P51826 1226 aaKnown RBP7.01□□□□□ -1.29
SCFD1-216ENST00000555550 SLC14A2Q15849 920 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 SKOR2Q2VWA4 1001 aaPredicted RBP7.01□□□□□ -1.29
SCFD1-216ENST00000555550 WAPLQ7Z5K2 1190 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 CCDC74BQ96LY2 380 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 KIF2CQ99661 725 aa7.01□□□□□ -1.29
SCFD1-216ENST00000555550 CNTD2Q9H8S5 307 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms