RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 ERVK-24P63145 666 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 ATP2B2Q01814 1243 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 Q3C1V9 767 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 GPRC5AQ8NFJ5 357 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 VCPKMTQ9H867 229 aa24.44■■□□□ 1.5
VTI1B-205ENST00000555543 RLFQ13129 1914 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 IGKV6D-41A0A0C4DH26 115 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 SPDYE16A6NNV3 312 aaPredicted RBP24.43■■□□□ 1.5
VTI1B-205ENST00000555543 MYCP01106 439 aaPredicted RBP24.43■■□□□ 1.5
VTI1B-205ENST00000555543 GRK4P32298 578 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 NBPF11Q86T75 865 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 GTF3C2Q8WUA4 911 aaPredicted RBP24.43■■□□□ 1.5
VTI1B-205ENST00000555543 TANGO6Q9C0B7 1094 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 SH2D4AQ9H788 454 aa24.43■■□□□ 1.5
VTI1B-205ENST00000555543 CCDC171Q6TFL3 1326 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 GSPT1P15170 499 aaKnown RBP24.42■■□□□ 1.5
VTI1B-205ENST00000555543 CTDSPL2Q05D32 466 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 LBX2Q6XYB7 198 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 LPAR1Q92633 364 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 COA7Q96BR5 231 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 PORCNQ9H237 461 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 TACC3Q9Y6A5 838 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 PLXNB2O15031 1838 aa24.42■■□□□ 1.5
VTI1B-205ENST00000555543 A0A0G2JMZ2 1700 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 KIAA0100Q14667 2235 aaKnown RBP24.41■■□□□ 1.5
VTI1B-205ENST00000555543 HSPD1P10809 573 aaKnown RBP24.41■■□□□ 1.5
VTI1B-205ENST00000555543 MLLT1Q03111 559 aaPredicted RBP24.41■■□□□ 1.5
VTI1B-205ENST00000555543 ALX1Q15699 326 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 ZNF287Q9HBT7 754 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 INCENPQ9NQS7 918 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 BTBD7Q9P203 1132 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.41■■□□□ 1.5
VTI1B-205ENST00000555543 RABGAP1Q9Y3P9 1069 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 PLIN4Q96Q06 1357 aa24.41■■□□□ 1.5
VTI1B-205ENST00000555543 ADCY3O60266 1144 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 ELNP15502 786 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 PDE4BQ07343 736 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 IRF5Q13568 498 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 FAM47AQ5JRC9 791 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 TTC22Q5TAA0 569 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 ZNF444Q8N0Y2 327 aaPredicted RBP24.4■■□□□ 1.5
VTI1B-205ENST00000555543 NYAP2Q9P242 653 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 GJD2Q9UKL4 321 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 PARP14Q460N5 1801 aa24.4■■□□□ 1.5
VTI1B-205ENST00000555543 WDR46O15213 610 aaKnown RBP24.39■■□□□ 1.49
VTI1B-205ENST00000555543 FGAP02671 866 aa24.39■■□□□ 1.49
VTI1B-205ENST00000555543 SLC3A2P08195 630 aaKnown RBP24.39■■□□□ 1.49
VTI1B-205ENST00000555543 MTFR1Q15390 333 aa24.39■■□□□ 1.49
VTI1B-205ENST00000555543 SLAIN1Q8ND83 568 aa24.39■■□□□ 1.49
VTI1B-205ENST00000555543 CEP95Q96GE4 821 aa24.39■■□□□ 1.49
VTI1B-205ENST00000555543 ANAPC4Q9UJX5 808 aa24.39■■□□□ 1.49
VTI1B-205ENST00000555543 COG2Q14746 738 aa24.38■■□□□ 1.49
VTI1B-205ENST00000555543 CWC27Q6UX04 472 aaKnown RBP24.38■■□□□ 1.49
VTI1B-205ENST00000555543 GOPCQ9HD26 462 aa24.38■■□□□ 1.49
VTI1B-205ENST00000555543 DIAPH3Q9NSV4 1193 aa24.38■■□□□ 1.49
VTI1B-205ENST00000555543 MKI67P46013 3256 aaKnown RBP24.38■■□□□ 1.49
VTI1B-205ENST00000555543 ZMYM6O95789 1325 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 FLOT1O75955 427 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 MAPK4P31152 587 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 NEDD1Q8NHV4 660 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 MTMR4Q9NYA4 1195 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 CLIP2Q9UDT6 1046 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 MYH4Q9Y623 1939 aa24.37■■□□□ 1.49
VTI1B-205ENST00000555543 RAD21O60216 631 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 TSPY3P0CV98 308 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 TSPY8P0CW00 308 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 EN2P19622 333 aaPredicted RBP24.36■■□□□ 1.49
VTI1B-205ENST00000555543 DSG3P32926 999 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 TFAP4Q01664 338 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 PXYLP1Q8TE99 480 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 ATG4CQ96DT6 458 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 NUP88Q99567 741 aaPredicted RBP24.36■■□□□ 1.49
VTI1B-205ENST00000555543 FBXO28Q9NVF7 368 aa24.36■■□□□ 1.49
VTI1B-205ENST00000555543 BIN2Q9UBW5 565 aaPredicted RBP24.36■■□□□ 1.49
VTI1B-205ENST00000555543 FAM83BQ5T0W9 1011 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 GPR142Q7Z601 462 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 TMEM106CQ9BVX2 250 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 NBPF3Q9H094 633 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 IL25Q9H293 177 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 HOXC10Q9NYD6 342 aa24.35■■□□□ 1.49
VTI1B-205ENST00000555543 HIP1O00291 1037 aa24.34■■□□□ 1.49
VTI1B-205ENST00000555543 NDUFB10O96000 172 aa24.34■■□□□ 1.49
VTI1B-205ENST00000555543 INHAP05111 366 aa24.34■■□□□ 1.49
VTI1B-205ENST00000555543 MFAP1P55081 439 aaKnown RBP24.34■■□□□ 1.49
VTI1B-205ENST00000555543 HAND2P61296 217 aa24.34■■□□□ 1.49
VTI1B-205ENST00000555543 SAMD1Q6SPF0 538 aaPredicted RBP24.34■■□□□ 1.49
VTI1B-205ENST00000555543 F5H6K3 240 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 ORC4O43929 436 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 TTLL1O95922 423 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 FGRP09769 529 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 CCL5P13501 91 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 CCNA1P78396 465 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 KLRC3Q07444 240 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 PLEKHH3Q7Z736 793 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 CCAR1Q8IX12 1150 aaKnown RBP24.33■■□□□ 1.49
VTI1B-205ENST00000555543 LRRC47Q8N1G4 583 aaKnown RBP24.33■■□□□ 1.49
VTI1B-205ENST00000555543 USP6NLQ92738 828 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 MKL1Q969V6 931 aa24.33■■□□□ 1.49
VTI1B-205ENST00000555543 TSPY2A6NKD2 308 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 NMT2O60551 498 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms