RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 JCADQ9P266 1359 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 PKD1L3Q7Z443 1732 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 CRB1P82279 1406 aa8.2□□□□□ -1.1
LINC00643-203ENST00000555518 SLIT2O94813 1529 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 F13BP05160 661 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 ZNF853P0CG23 659 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 JUNBP17275 347 aaPredicted RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 MZF1P28698 734 aaPredicted RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 USP11P51784 963 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 EXOSC6Q5RKV6 272 aaKnown RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 FBXL6Q8N531 539 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 AGBL5Q8NDL9 886 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 CCDC97Q96F63 343 aaPredicted RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 THUMPD2Q9BTF0 503 aaKnown RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 BSDC1Q9NW68 430 aaPredicted RBP8.19□□□□□ -1.1
LINC00643-203ENST00000555518 SERPINA10Q9UK55 444 aa8.19□□□□□ -1.1
LINC00643-203ENST00000555518 DCTN1Q14203 1278 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 NOM1Q5C9Z4 860 aaKnown RBP8.18□□□□□ -1.1
LINC00643-203ENST00000555518 HP1BP3Q5SSJ5 553 aaPredicted RBP8.18□□□□□ -1.1
LINC00643-203ENST00000555518 ALKBH2Q6NS38 261 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 CBLL1Q75N03 491 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 HELQQ8TDG4 1101 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 EDEM1Q92611 657 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 NXPE3Q969Y0 559 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 USP26Q9BXU7 913 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 NLRP2Q9NX02 1062 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 FANCIQ9NVI1 1328 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 CEMIPQ8WUJ3 1361 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 MAP3K5Q99683 1374 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 OVOS2A0A0G2JMS6 1433 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 DISP2A7MBM2 1401 aa8.18□□□□□ -1.1
LINC00643-203ENST00000555518 SHANK3Q9BYB0 1731 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 LOC100289279A0A1B0GTE1 492 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 SOX1O00570 391 aaPredicted RBP8.17□□□□□ -1.1
LINC00643-203ENST00000555518 NEFMP07197 916 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 ATP2B4P23634 1241 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 HSPA1LP34931 641 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 DNM1Q05193 864 aaKnown RBP8.17□□□□□ -1.1
LINC00643-203ENST00000555518 LMOD3Q0VAK6 560 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 NFKBIBQ15653 356 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 C8orf34Q49A92 452 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 MCM10Q7L590 875 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 TP53INP2Q8IXH6 220 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 OSMRQ99650 979 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 ZFYVE1Q9HBF4 777 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 PARP4Q9UKK3 1724 aaKnown RBP8.17□□□□□ -1.1
LINC00643-203ENST00000555518 NWD2Q9ULI1 1742 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 WNK3Q9BYP7 1800 aa8.17□□□□□ -1.1
LINC00643-203ENST00000555518 CYP26A1O43174 497 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 HTATSF1O43719 755 aaKnown RBP8.16□□□□□ -1.1
LINC00643-203ENST00000555518 PDGFAP04085 211 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 CYP27A1Q02318 531 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 EHHADHQ08426 723 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 VN1R5Q7Z5H4 357 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 ATCAYQ86WG3 371 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 IL17REQ8NFR9 667 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 EZH1Q92800 747 aaPredicted RBP8.16□□□□□ -1.1
LINC00643-203ENST00000555518 TSR2Q969E8 191 aaKnown RBP8.16□□□□□ -1.1
LINC00643-203ENST00000555518 IFT57Q9NWB7 429 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 BTG4Q9NY30 223 aa8.16□□□□□ -1.1
LINC00643-203ENST00000555518 SUPT16HQ9Y5B9 1047 aaKnown RBP8.16□□□□□ -1.1
LINC00643-203ENST00000555518 KDM6AO15550 1401 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 SPATA31A6Q5VVP1 1343 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 CHL1O00533 1208 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 ACPPP15309 386 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 USP5P45974 858 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 AMOTQ4VCS5 1084 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 PLEKHO1Q53GL0 409 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 LCE1DQ5T752 114 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 ZNF530Q6P9A1 599 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 POU5F2Q8N7G0 328 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 BHLHE41Q9C0J9 482 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 MYH16Q9H6N6 1097 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 RCAN3Q9UKA8 241 aa8.15□□□□□ -1.1
LINC00643-203ENST00000555518 ARID1BQ8NFD5 2236 aaPredicted RBP8.15□□□□□ -1.1
LINC00643-203ENST00000555518 VIRMAQ69YN4 1812 aaKnown RBP8.15□□□□□ -1.11
LINC00643-203ENST00000555518 SIPA1L3O60292 1781 aaPredicted RBP8.15□□□□□ -1.11
LINC00643-203ENST00000555518 MRC1P22897 1456 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 BCL9LQ86UU0 1499 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 GNAT3A8MTJ3 354 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 CYP27B1O15528 508 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 MAP7Q14244 749 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 AKAP4Q5JQC9 854 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 OGFOD2Q6N063 350 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 TOM1L2Q6ZVM7 507 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 ZAR1Q86SH2 424 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 SNX29Q8TEQ0 813 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 PBXIP1Q96AQ6 731 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 TBC1D32Q96NH3 1257 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 ZKSCAN3Q9BRR0 538 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 CHRDQ9H2X0 955 aa8.14□□□□□ -1.11
LINC00643-203ENST00000555518 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.14□□□□□ -1.11
LINC00643-203ENST00000555518 KDM3BQ7LBC6 1761 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 SCN11AQ9UI33 1791 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 PHACTR2O75167 634 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 PHKG2P15735 406 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 ITGB5P18084 799 aa8.13□□□□□ -1.11
LINC00643-203ENST00000555518 RRP1P56182 461 aaKnown RBP8.13□□□□□ -1.11
LINC00643-203ENST00000555518 GNAI1P63096 354 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms