RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 TATDN1Q6P1N9 297 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 CATSPERGQ6ZRH7 1159 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 LPAR1Q92633 364 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 GPR108Q9NPR9 543 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 SPTBN5Q9NRC6 3674 aaKnown RBP13.77□□□□□ -0.21
VPS33B-204ENST00000554660 ZBTB40Q9NUA8 1239 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 DBNLQ9UJU6 430 aaKnown RBP13.77□□□□□ -0.21
VPS33B-204ENST00000554660 ATP11BQ9Y2G3 1177 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 IVNS1ABPQ9Y6Y0 642 aa13.77□□□□□ -0.21
VPS33B-204ENST00000554660 ZNF236Q9UL36 1845 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 SPDYE16A6NNV3 312 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-204ENST00000554660 HOXC6P09630 235 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 CYBAP13498 195 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 ATP2B2Q01814 1243 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 POLA2Q14181 598 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 GJC2Q5T442 439 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-204ENST00000554660 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 ANO1Q5XXA6 986 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 FAM109BQ6ICB4 259 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-204ENST00000554660 KIAA1683Q9H0B3 1180 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 RPAP3Q9H6T3 665 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-204ENST00000554660 C1orf115Q9H7X2 142 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 PRDM5Q9NQX1 630 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-204ENST00000554660 PRKAG2Q9UGJ0 569 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 SERPINB13Q9UIV8 391 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 NAV1Q8NEY1 1877 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 A0A0G2JMZ2 1700 aa13.76□□□□□ -0.21
VPS33B-204ENST00000554660 MSCO60682 206 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 MYCNP04198 464 aaPredicted RBP13.75□□□□□ -0.21
VPS33B-204ENST00000554660 USP14P54578 494 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 ABCB5Q2M3G0 1257 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 C9orf50Q5SZB4 431 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 LBX2Q6XYB7 198 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 TMEM57Q8N5G2 664 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 MAGEB6Q8N7X4 407 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 ZNF512BQ96KM6 892 aaPredicted RBP13.75□□□□□ -0.21
VPS33B-204ENST00000554660 EHD4Q9H223 541 aa13.75□□□□□ -0.21
VPS33B-204ENST00000554660 RLFQ13129 1914 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 PRUNE2Q8WUY3 3088 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 SURF6O75683 361 aaKnown RBP13.74□□□□□ -0.21
VPS33B-204ENST00000554660 SHMT1P34896 483 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 EVX2Q03828 476 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 SHHQ15465 462 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 CERKLQ49MI3 558 aaPredicted RBP13.74□□□□□ -0.21
VPS33B-204ENST00000554660 CCDC8Q9H0W5 538 aaPredicted RBP13.74□□□□□ -0.21
VPS33B-204ENST00000554660 ANTXR1Q9H6X2 564 aa13.74□□□□□ -0.21
VPS33B-204ENST00000554660 IGHA2P01877 340 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 ADORA2AP29274 412 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 GUCY1A2P33402 732 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 PLCD1P51178 756 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 SEPT2Q15019 361 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 TRIM60Q495X7 471 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 DPP9Q86TI2 863 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 ITPRIPQ8IWB1 547 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 SSH3Q8TE77 659 aa13.73□□□□□ -0.21
VPS33B-204ENST00000554660 CDX2Q99626 313 aaPredicted RBP13.73□□□□□ -0.21
VPS33B-204ENST00000554660 MOV10L1Q9BXT6 1211 aaKnown RBP13.73□□□□□ -0.21
VPS33B-204ENST00000554660 KBTBD13C9JR72 458 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 NUCB1Q02818 461 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 SLC39A5Q6ZMH5 540 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 TTC6Q86TZ1 520 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 MAFAQ8NHW3 353 aaPredicted RBP13.72□□□□□ -0.21
VPS33B-204ENST00000554660 BADQ92934 168 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 EAF2Q96CJ1 260 aaPredicted RBP13.72□□□□□ -0.21
VPS33B-204ENST00000554660 TANGO6Q9C0B7 1094 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 CABP5Q9NP86 173 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 PDLIM7Q9NR12 457 aa13.72□□□□□ -0.21
VPS33B-204ENST00000554660 A0A1W2PRG0 241 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 MPHOSPH10O00566 681 aaKnown RBP13.71□□□□□ -0.21
VPS33B-204ENST00000554660 IGSF3O75054 1194 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 ERCC3P19447 782 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 ATP8B2P98198 1209 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 OLFML2BQ68BL8 750 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 SH3RF1Q7Z6J0 888 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 CERS3Q8IU89 383 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 ARRDC4Q8NCT1 418 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 MYLIPQ8WY64 445 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 FERMT2Q96AC1 680 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 RIOK1Q9BRS2 568 aaKnown RBP13.71□□□□□ -0.21
VPS33B-204ENST00000554660 SPATC1LQ9H0A9 340 aa13.71□□□□□ -0.21
VPS33B-204ENST00000554660 TTYH1Q9H313 450 aaPredicted RBP13.71□□□□□ -0.21
VPS33B-204ENST00000554660 SEPT4O43236 478 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 COBLO75128 1261 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 SEC24BO95487 1268 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 POLR3DP05423 398 aaPredicted RBP13.7□□□□□ -0.22
VPS33B-204ENST00000554660 SNX17Q15036 470 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 BMP2KLQ5H9B9 411 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 FAM47AQ5JRC9 791 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 KIAA1755Q5JYT7 1200 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 PRAMEF19Q5SWL8 479 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 CLEC10AQ8IUN9 316 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 SLC44A5Q8NCS7 719 aa13.7□□□□□ -0.22
VPS33B-204ENST00000554660 TRIM43BA6NCK2 446 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 ADCYAP1R1P41586 468 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 RBM25P49756 843 aaKnown RBP13.69□□□□□ -0.22
VPS33B-204ENST00000554660 GABPAQ06546 454 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 MAP3K12Q12852 859 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 PLS1Q14651 629 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 COG2Q14746 738 aa13.69□□□□□ -0.22
VPS33B-204ENST00000554660 SAMD1Q6SPF0 538 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms