RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 CCDC112Q8NEF3 446 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 CCDC74AQ96AQ1 378 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 PGBD1Q96JS3 809 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 FEZ1Q99689 392 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 FTOQ9C0B1 505 aaKnown RBP eCLIP3□□□□□ -1.93
PRPF39-207ENST00000554439 COPRSQ9NQ92 184 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF215Q9UL58 517 aaPredicted RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 CYP46A1Q9Y6A2 500 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 RIMBP3CA6NJZ7 1639 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 RIMBP3BA6NNM3 1639 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 RIMBP3Q9UFD9 1639 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 DLC1Q96QB1 1528 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 TTC21BQ7Z4L5 1316 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 GOLGA6L4A6NEF3 574 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 JAK2O60674 1132 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 CPNE3O75131 537 aaKnown RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 RAB11FIP3O75154 756 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 CHGBP05060 677 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 TPM3P06753 285 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 OS9Q13438 667 aaPredicted RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 TRIP4Q15650 581 aaPredicted RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 CREB3L3Q68CJ9 461 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF746Q6NUN9 644 aaPredicted RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 FBXO38Q6PIJ6 1188 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 XKR5Q6UX68 686 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 FILIP1Q7Z7B0 1213 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 LRRC8AQ8IWT6 810 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 NBPF15Q8N660 670 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 IL17REQ8NFR9 667 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 LEO1Q8WVC0 666 aaPredicted RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 TRERF1Q96PN7 1200 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 SEMA6BQ9H3T3 888 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF446Q9NWS9 450 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 RBM8AQ9Y5S9 174 aaKnown RBP3□□□□□ -1.93
PRPF39-207ENST00000554439 USP16Q9Y5T5 823 aa3□□□□□ -1.93
PRPF39-207ENST00000554439 C3P01024 1663 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 NRKQ7Z2Y5 1582 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 CEP170BQ9Y4F5 1589 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ACEP12821 1306 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 AOX1Q06278 1338 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TTC21AQ8NDW8 1320 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 MON2Q7Z3U7 1717 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 FAM208AQ9UK61 1670 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 MICAL2O94851 1124 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 IFIT2P09913 472 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 BCRP11274 1271 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 GRNP28799 593 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 KCNJ4P48050 445 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ST13P50502 369 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 RBM6P78332 1123 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TOB2Q14106 344 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 MLECQ14165 292 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 NECTIN1Q15223 517 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TAF7Q15545 349 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TERF2Q15554 542 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 NUTM2GQ5VZR2 741 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SDE2Q6IQ49 451 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 JAZF1Q86VZ6 243 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 USHBP1Q8N6Y0 703 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF280CQ8ND82 737 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 BICD2Q8TD16 824 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 KIF1BPQ96EK5 621 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 EDC3Q96F86 508 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 LTV1Q96GA3 475 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 GPATCH3Q96I76 525 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 CLSTN2Q9H4D0 955 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ZSWIM4Q9H7M6 989 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 GGT7Q9UJ14 662 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 USP20Q9Y2K6 914 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TMA7Q9Y2S6 64 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 MORC2Q9Y6X9 1032 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 A0A0D9SFI3 127 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 PI4KAP2A4QPH2 592 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 KRBA1A5PL33 1030 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SLC27A2O14975 620 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SETD1AO15047 1707 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 KCNQ3O43525 872 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 RGPD1P0DJD0 1748 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SKILP12757 684 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 PAK2Q13177 524 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 NMIQ13287 307 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TCEAL1Q15170 157 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TAF1CQ15572 869 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF589Q86UQ0 364 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 ANKRD13AQ8IZ07 590 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 PI4KAP1Q8N8J0 262 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TDRD7Q8NHU6 1098 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 RASGRP4Q8TDF6 673 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 GTF3C6Q969F1 213 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SPACA7Q96KW9 195 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 LRRC2Q9BYS8 371 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 OSBPL2Q9H1P3 480 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 GOLPH3LQ9H4A5 285 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 SH2B1Q9NRF2 756 aaPredicted RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 PGPEP1Q9NXJ5 209 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 TLR7Q9NYK1 1049 aaKnown RBP2.99□□□□□ -1.93
PRPF39-207ENST00000554439 CHPF2Q9P2E5 772 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 PAXBP1Q9Y5B6 917 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 KCNMB2Q9Y691 235 aa2.99□□□□□ -1.93
PRPF39-207ENST00000554439 AKAP12Q02952 1782 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms