RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 USP6NLQ92738 828 aa15.31■□□□□ 0.04
LINC00643-202ENST00000553426 RBM27Q9P2N5 1060 aaKnown RBP15.31■□□□□ 0.04
LINC00643-202ENST00000553426 A0A1W2PRG0 241 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 CNMDO75829 334 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 AKR1B1P15121 316 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 PTPREP23469 700 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 EVX2Q03828 476 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 CACNB2Q08289 660 aaPredicted RBP15.3■□□□□ 0.04
LINC00643-202ENST00000553426 C16orf86Q6ZW13 317 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 MB21D1Q8N884 522 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 KBTBD3Q8NAB2 608 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 PUS7LQ9H0K6 701 aaKnown RBP15.3■□□□□ 0.04
LINC00643-202ENST00000553426 KANSL2Q9H9L4 492 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 ARPP21Q9UBL0 812 aaPredicted RBP15.3■□□□□ 0.04
LINC00643-202ENST00000553426 OGDHLQ9ULD0 1010 aa15.3■□□□□ 0.04
LINC00643-202ENST00000553426 COL6A3P12111 3177 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 CYP2D7A0A087X1C5 515 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 STRNO43815 780 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 FLOT1O75955 427 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 ZFYP08048 801 aaPredicted RBP15.29■□□□□ 0.04
LINC00643-202ENST00000553426 ATP2B2Q01814 1243 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 POTEEQ6S8J3 1075 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 VCPKMTQ9H867 229 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 BTBD7Q9P203 1132 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
LINC00643-202ENST00000553426 TMX2Q9Y320 296 aa15.29■□□□□ 0.04
LINC00643-202ENST00000553426 ERC2O15083 957 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 WDR46O15213 610 aaKnown RBP15.28■□□□□ 0.04
LINC00643-202ENST00000553426 RNF113AO15541 343 aaKnown RBP15.28■□□□□ 0.04
LINC00643-202ENST00000553426 GRB14Q14449 540 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 PLS1Q14651 629 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 CCL14Q16627 93 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 GIMAP6Q6P9H5 292 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 CTR9Q6PD62 1173 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 DPP9Q86TI2 863 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 SPICE1Q8N0Z3 855 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 DIS3LQ8TF46 1054 aaKnown RBP15.28■□□□□ 0.04
LINC00643-202ENST00000553426 SPATC1LQ9H0A9 340 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 C11orf49Q9H6J7 331 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 GOPCQ9HD26 462 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 SLC5A4Q9NY91 659 aa15.28■□□□□ 0.04
LINC00643-202ENST00000553426 PLXNB2O15031 1838 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 RAD21O60216 631 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 CHGBP05060 677 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 HOXC6P09630 235 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 GNAT2P19087 354 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 DSG3P32926 999 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 SAMD1Q6SPF0 538 aaPredicted RBP15.27■□□□□ 0.04
LINC00643-202ENST00000553426 SHCBP1Q8NEM2 672 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 APPBP2Q92624 585 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 STRBPQ96SI9 672 aaKnown RBP15.27■□□□□ 0.04
LINC00643-202ENST00000553426 MOV10L1Q9BXT6 1211 aaKnown RBP15.27■□□□□ 0.04
LINC00643-202ENST00000553426 MROH8Q9H579 483 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 MKNK2Q9HBH9 465 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 ZNF287Q9HBT7 754 aa15.27■□□□□ 0.04
LINC00643-202ENST00000553426 TTC41PQ6P2S7 1318 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 MYH7P12883 1935 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 MYH8P13535 1937 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 MINDY4BA8MYZ0 360 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 MSCO60682 206 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 APPP05067 770 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 EEF2P13639 858 aaKnown RBP15.26■□□□□ 0.03
LINC00643-202ENST00000553426 CCND3P30281 292 aaPredicted RBP15.26■□□□□ 0.03
LINC00643-202ENST00000553426 SBK1Q52WX2 424 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 CLEC10AQ8IUN9 316 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 LAMA3Q16787 3333 aa15.26■□□□□ 0.03
LINC00643-202ENST00000553426 BAZ2AQ9UIF9 1905 aaKnown RBP15.25■□□□□ 0.03
LINC00643-202ENST00000553426 DLL1O00548 723 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 ERCC3P19447 782 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 CNGA1P29973 690 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 TDO2P48775 406 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 TSHZ3Q63HK5 1081 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 NCAPG2Q86XI2 1143 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 SIAH1Q8IUQ4 282 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 C7orf61Q8IZ16 206 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 NACAP1Q9BZK3 213 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 PRO3102Q9H379 93 aa15.25■□□□□ 0.03
LINC00643-202ENST00000553426 A0A1W2PPC1 479 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 GSG1L2A8MUP6 293 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 GPAA1O43292 621 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 SLC25A27O95847 323 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 ADORA2AP29274 412 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 KIAA1755Q5JYT7 1200 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 ABRAQ8N0Z2 381 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 OSBP2Q969R2 916 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 ATG4CQ96DT6 458 aa15.24■□□□□ 0.03
LINC00643-202ENST00000553426 SMIM22K7EJ46 135 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 SLC3A2P08195 630 aaKnown RBP15.23■□□□□ 0.03
LINC00643-202ENST00000553426 FCER1AP12319 257 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 MNX1P50219 401 aaPredicted RBP15.23■□□□□ 0.03
LINC00643-202ENST00000553426 RRP1P56182 461 aaKnown RBP15.23■□□□□ 0.03
LINC00643-202ENST00000553426 OLFML2BQ68BL8 750 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 LHX8Q68G74 356 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 ZNF444Q8N0Y2 327 aaPredicted RBP15.23■□□□□ 0.03
LINC00643-202ENST00000553426 STK11IPQ8N1F8 1099 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 NPLOC4Q8TAT6 608 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 FSD1Q9BTV5 496 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 FLRT1Q9NZU1 646 aa15.23■□□□□ 0.03
LINC00643-202ENST00000553426 DDX20Q9UHI6 824 aaKnown RBP15.23■□□□□ 0.03
LINC00643-202ENST00000553426 PCDHB15Q9Y5E8 787 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms