RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PRDM15P57071 1507 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 GSTP1P09211 210 aaKnown RBP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 TMEM253P0C7T8 217 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 ATF3P18847 181 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 GDNFP39905 211 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 SF3B2Q13435 895 aaKnown RBP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 CIAPIN1Q6FI81 312 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 PRPF40BQ6NWY9 871 aaKnown RBP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 LRRC59Q96AG4 307 aaKnown RBP5.6□□□□□ -1.51
LIMA1-206ENST00000550611 EHD4Q9H223 541 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 CCDC87Q9NVE4 849 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 C19orf73Q9NVV2 129 aa5.6□□□□□ -1.51
LIMA1-206ENST00000550611 TET3O43151 1660 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 DIP2AQ14689 1571 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 BCL9LQ86UU0 1499 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 BLMP54132 1417 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-206ENST00000550611 ERVK-24P63145 666 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 ERICH6Q7L0X2 663 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 RNF214Q8ND24 703 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 ZC3H12CQ9C0D7 883 aaKnown RBP5.59□□□□□ -1.51
LIMA1-206ENST00000550611 NSUN3Q9H649 340 aaKnown RBP5.59□□□□□ -1.51
LIMA1-206ENST00000550611 ABCB6Q9NP58 842 aa5.59□□□□□ -1.51
LIMA1-206ENST00000550611 UBR1Q8IWV7 1749 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 NEFLP07196 543 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 HOXA5P20719 270 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 GLDCP23378 1020 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 SSFA2P28290 1259 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 FKBP4Q02790 459 aaKnown RBP eCLIP5.58□□□□□ -1.52
LIMA1-206ENST00000550611 FAAP100Q0VG06 881 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 ZC3H12AQ5D1E8 599 aaKnown RBP5.58□□□□□ -1.52
LIMA1-206ENST00000550611 ATG14Q6ZNE5 492 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 CCDC120Q96HB5 630 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 DIRC2Q96SL1 478 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 C19orf44Q9H6X5 657 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 SSU72Q9NP77 194 aaKnown RBP5.58□□□□□ -1.52
LIMA1-206ENST00000550611 PRDM10Q9NQV6 1147 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 RRP7BPQ9NSQ0 103 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 DUOX2Q9NRD8 1548 aa5.58□□□□□ -1.52
LIMA1-206ENST00000550611 ABCC5O15440 1437 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 ATRNO75882 1429 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 NOS1P29475 1434 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 MYOM3Q5VTT5 1437 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 PNPLA6Q8IY17 1366 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 KIF15Q9NS87 1388 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 EIF2AK4Q9P2K8 1649 aaKnown RBP5.57□□□□□ -1.52
LIMA1-206ENST00000550611 TMEM238LA0A1B0GVL6 79 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 GNAT3A8MTJ3 354 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 USPL1Q5W0Q7 1092 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 PDZD3Q86UT5 571 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 C20orf173Q96LM9 149 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 EPB41L4BQ9H329 900 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 CARS2Q9HA77 564 aaKnown RBP5.57□□□□□ -1.52
LIMA1-206ENST00000550611 SLC52A1Q9NWF4 448 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 TBX22Q9Y458 520 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 LMTK2Q8IWU2 1503 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 ERBINQ96RT1 1412 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 NCOA3Q9Y6Q9 1424 aa5.57□□□□□ -1.52
LIMA1-206ENST00000550611 AHDC1Q5TGY3 1603 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-206ENST00000550611 TCAF2A6NFQ2 919 aa5.56□□□□□ -1.52
LIMA1-206ENST00000550611 EZH2Q15910 746 aaKnown RBP5.56□□□□□ -1.52
LIMA1-206ENST00000550611 NPAS4Q8IUM7 802 aa5.56□□□□□ -1.52
LIMA1-206ENST00000550611 RELTQ969Z4 430 aa5.56□□□□□ -1.52
LIMA1-206ENST00000550611 DCP1AQ9NPI6 582 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-206ENST00000550611 NKTRP30414 1462 aaKnown RBP5.56□□□□□ -1.52
LIMA1-206ENST00000550611 SETD5Q9C0A6 1442 aa5.56□□□□□ -1.52
LIMA1-206ENST00000550611 PLEKHG1Q9ULL1 1385 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 NWD1Q149M9 1564 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 EFCAB6Q5THR3 1501 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 SRFP11831 508 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 ZNF157P51786 506 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-206ENST00000550611 PPP2R3AQ06190 1150 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 NPHS2Q9NP85 383 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 SEMA3GQ9NS98 782 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 SMG5Q9UPR3 1016 aaKnown RBP5.55□□□□□ -1.52
LIMA1-206ENST00000550611 TRAK1Q9UPV9 953 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 MAPK8IP1Q9UQF2 711 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 MTMR7Q9Y216 660 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 ZFYVE9O95405 1425 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 NHSL1Q5SYE7 1610 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 KANK1Q14678 1352 aa5.55□□□□□ -1.52
LIMA1-206ENST00000550611 KDM5AP29375 1690 aaKnown RBP5.54□□□□□ -1.52
LIMA1-206ENST00000550611 ETV2O00321 342 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-206ENST00000550611 EOMESO95936 686 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 LINC00310P59036 64 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 KCNB2Q92953 911 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 FOXQ1Q9C009 403 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 ATP13A1Q9HD20 1204 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 PARD6AQ9NPB6 346 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 TMEM39AQ9NV64 488 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 PPP1R1BQ9UD71 204 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-206ENST00000550611 PIK3C2BO00750 1634 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 VPS8Q8N3P4 1428 aa5.54□□□□□ -1.52
LIMA1-206ENST00000550611 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-206ENST00000550611 CAMTA1Q9Y6Y1 1673 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 NUAK1O60285 661 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 CPNE3O75131 537 aaKnown RBP5.53□□□□□ -1.52
LIMA1-206ENST00000550611 NTF4P34130 210 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 DBX2Q6ZNG2 339 aa5.53□□□□□ -1.52
LIMA1-206ENST00000550611 C22orf34Q6ZV56 151 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms