RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 OS9Q13438 667 aaPredicted RBP9.33□□□□□ -0.92
NEK3-201ENST00000550331 Q7L0L9 218 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 FTSJ3Q8IY81 847 aaKnown RBP9.33□□□□□ -0.92
NEK3-201ENST00000550331 C7orf61Q8IZ16 206 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 EMID1Q96A84 441 aaPredicted RBP9.33□□□□□ -0.92
NEK3-201ENST00000550331 COA7Q96BR5 231 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 PAWRQ96IZ0 340 aaKnown RBP9.33□□□□□ -0.92
NEK3-201ENST00000550331 DEFB118Q96PH6 123 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 DBNDD2Q9BQY9 259 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 WDR18Q9BV38 432 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 GINM1Q9NU53 330 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 AATFQ9NY61 560 aaKnown RBP eCLIP9.33□□□□□ -0.92
NEK3-201ENST00000550331 STXBP5LQ9Y2K9 1186 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 PTPRFP10586 1907 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 MYH2Q9UKX2 1941 aa9.33□□□□□ -0.92
NEK3-201ENST00000550331 FLT1P17948 1338 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 SURF6O75683 361 aaKnown RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 CYP2E1P05181 493 aaPredicted RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 BMP8BP34820 402 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 HMGCS2P54868 508 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 RRP1BQ14684 758 aaKnown RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 CERS3Q8IU89 383 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 FOXP4Q8IVH2 680 aaPredicted RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 TGFBRAP1Q8WUH2 860 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 DDX27Q96GQ7 796 aaKnown RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 GDF15Q99988 308 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 COL25A1Q9BXS0 654 aaPredicted RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 PAK6Q9NQU5 681 aaPredicted RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 SNRKQ9NRH2 765 aa9.32□□□□□ -0.92
NEK3-201ENST00000550331 ZMYND8Q9ULU4 1186 aaPredicted RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 NOP58Q9Y2X3 529 aaKnown RBP9.32□□□□□ -0.92
NEK3-201ENST00000550331 DDX60LQ5H9U9 1706 aaKnown RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 FAM181BA6NEQ2 426 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 C19orf81C9J6K1 198 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 MTMR2Q13614 643 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 TMED8Q6PL24 325 aaPredicted RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 NECAB2Q7Z6G3 386 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 ADGRA1Q86SQ6 560 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 ITPRIPQ8IWB1 547 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 CRIPAKQ8N1N5 446 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 CRACR2BQ8N4Y2 399 aaPredicted RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 DIS3LQ8TF46 1054 aaKnown RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 ASCC2Q9H1I8 757 aaPredicted RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 DNAJC18Q9H819 358 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 EMILIN3Q9NT22 766 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 MTMR10Q9NXD2 777 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 TMOD4Q9NZQ9 345 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 MORF4L1Q9UBU8 362 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 DBNLQ9UJU6 430 aaKnown RBP9.31□□□□□ -0.92
NEK3-201ENST00000550331 LOC285556D6RIA3 1793 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 PHIPQ8WWQ0 1821 aa9.31□□□□□ -0.92
NEK3-201ENST00000550331 RNF223E7ERA6 249 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 GDF9O60383 454 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 HMGCRP04035 888 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 HLA-DOAP06340 250 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 HOXA7P31268 230 aaPredicted RBP9.3□□□□□ -0.92
NEK3-201ENST00000550331 ZAP70P43403 619 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 BACE1P56817 501 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 IRX3P78415 501 aaPredicted RBP9.3□□□□□ -0.92
NEK3-201ENST00000550331 MAPKAPK5Q8IW41 473 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 EAF2Q96CJ1 260 aaPredicted RBP9.3□□□□□ -0.92
NEK3-201ENST00000550331 TRIM34Q9BYJ4 488 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 C1orf115Q9H7X2 142 aa9.3□□□□□ -0.92
NEK3-201ENST00000550331 PIH1D3Q9NQM4 214 aaKnown RBP9.3□□□□□ -0.92
NEK3-201ENST00000550331 IDH1O75874 414 aaKnown RBP9.29□□□□□ -0.92
NEK3-201ENST00000550331 RLBP1P12271 317 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 SYN1P17600 705 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 CYP7A1P22680 504 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 MAGEA10P43363 369 aaPredicted RBP9.29□□□□□ -0.92
NEK3-201ENST00000550331 JAG1P78504 1218 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 HNRNPUQ00839 825 aaKnown RBP eCLIP9.29□□□□□ -0.92
NEK3-201ENST00000550331 SUZ12Q15022 739 aaKnown RBP9.29□□□□□ -0.92
NEK3-201ENST00000550331 LRIT3Q3SXY7 679 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 ZNF697Q5TEC3 545 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 ERC1Q8IUD2 1116 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 TDHQ8IZJ6 230 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 HS6ST3Q8IZP7 471 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 ANKLE1Q8NAG6 615 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 GTF3C2Q8WUA4 911 aaPredicted RBP9.29□□□□□ -0.92
NEK3-201ENST00000550331 SOCS4Q8WXH5 440 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.29□□□□□ -0.92
NEK3-201ENST00000550331 EHD4Q9H223 541 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 TLR7Q9NYK1 1049 aaKnown RBP9.29□□□□□ -0.92
NEK3-201ENST00000550331 GJD2Q9UKL4 321 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 PALD1Q9ULE6 856 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 ZBTB21Q9ULJ3 1066 aa9.29□□□□□ -0.92
NEK3-201ENST00000550331 VCANP13611 3396 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 USP17L10C9JJH3 530 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 GDF11O95390 407 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 XRCC5P13010 732 aaKnown RBP9.28□□□□□ -0.92
NEK3-201ENST00000550331 HERVK_113P62684 666 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 TATDN1Q6P1N9 297 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 CEP85Q6P2H3 762 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.28□□□□□ -0.92
NEK3-201ENST00000550331 GPRC5AQ8NFJ5 357 aa9.28□□□□□ -0.92
NEK3-201ENST00000550331 UBE2OQ9C0C9 1292 aaKnown RBP9.28□□□□□ -0.92
NEK3-201ENST00000550331 CCDC8Q9H0W5 538 aaPredicted RBP9.28□□□□□ -0.92
NEK3-201ENST00000550331 HMX1Q9NP08 348 aaPredicted RBP9.28□□□□□ -0.92
NEK3-201ENST00000550331 RYDENQ9NUL5 291 aaKnown RBP9.28□□□□□ -0.92
NEK3-201ENST00000550331 SAP30BPQ9UHR5 308 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms