RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RHOXF2Q9BQY4 288 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 PHF20Q9BVI0 1012 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 STX10O60499 249 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 FUT2Q10981 343 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 ANKRD18AQ8IVF6 992 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 STAG2Q8N3U4 1231 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 UIMC1Q96RL1 719 aa17.08■□□□□ 0.32
USP28-214ENST00000545540 GOLGA8HP0CJ92 632 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 GNAT2P19087 354 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 NPY5RQ15761 445 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 SLF1Q9BQI6 1058 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 XDHP47989 1333 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 EP400Q96L91 3159 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 PPP1R3GB7ZBB8 358 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 XBP1P17861 261 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 SLC44A5Q8NCS7 719 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 KIFC2Q96AC6 838 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 CEP131Q9UPN4 1083 aa17.07■□□□□ 0.32
USP28-214ENST00000545540 TSPY2A6NKD2 308 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 MECOMQ03112 1051 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 MCM6Q14566 821 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 DDB1Q16531 1140 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 TMTC2Q8N394 836 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 NUP88Q99567 741 aaPredicted RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 DCCP43146 1447 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 PARP4Q9UKK3 1724 aaKnown RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 PNPLA7Q6ZV29 1317 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 KIF20AO95235 890 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 MAP3K9P80192 1104 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 KIF4BQ2VIQ3 1234 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 RNF26Q9BY78 433 aaPredicted RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 SRP68Q9UHB9 627 aaKnown RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 MINPP1Q9UNW1 487 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 BAZ2AQ9UIF9 1905 aaKnown RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 A0A1B0GTH6 734 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 GYPCP04921 128 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 NT5DC1Q5TFE4 455 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 SPATA1Q5VX52 437 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 MARCH10Q8NA82 808 aaPredicted RBP17.06■□□□□ 0.32
USP28-214ENST00000545540 CHP1Q99653 195 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 DACH1Q9UI36 760 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 MRFAP1Q9Y605 127 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 ADGRG1Q9Y653 693 aa17.06■□□□□ 0.32
USP28-214ENST00000545540 ENC1O14682 589 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 CCDC175P0C221 793 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 GABPB1Q06547 395 aaPredicted RBP17.05■□□□□ 0.32
USP28-214ENST00000545540 CAVIN4Q5BKX8 364 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 MCM9Q9NXL9 1143 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 ADD3Q9UEY8 706 aaKnown RBP17.05■□□□□ 0.32
USP28-214ENST00000545540 COL1A1P02452 1464 aaPredicted RBP17.05■□□□□ 0.32
USP28-214ENST00000545540 USP17L3A6NCW0 530 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 USP17L4A6NCW7 530 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 CCP110O43303 1012 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 KRT31Q15323 416 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 USP17L1Q7RTZ2 530 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 CTCFLQ8NI51 663 aaPredicted RBP17.05■□□□□ 0.32
USP28-214ENST00000545540 FAM205AQ6ZU69 1335 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 SLC35F6Q8N357 371 aa17.05■□□□□ 0.32
USP28-214ENST00000545540 ARGLU1Q9NWB6 273 aaPredicted RBP17.05■□□□□ 0.32
USP28-214ENST00000545540 EFCAB8A8MWE9 144 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 GDAP1L1Q96MZ0 367 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 TBC1D8O95759 1140 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 KCNJ6P48051 423 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 PMS1P54277 932 aaKnown RBP17.04■□□□□ 0.32
USP28-214ENST00000545540 TYW1BQ6NUM6 668 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 HPS3Q969F9 1004 aa17.04■□□□□ 0.32
USP28-214ENST00000545540 SAP30BPQ9UHR5 308 aaKnown RBP17.04■□□□□ 0.32
USP28-214ENST00000545540 NUP98P52948 1817 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 NKRFO15226 690 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP28-214ENST00000545540 PHACTR2O75167 634 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 ZRANB2O95218 330 aaKnown RBP eCLIP17.03■□□□□ 0.321e-6■■■■■ 42
USP28-214ENST00000545540 DIXDC1Q155Q3 683 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 CC2D1AQ6P1N0 951 aaPredicted RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 VAT1LQ9HCJ6 419 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 SHANK3Q9BYB0 1731 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 ERVK-24P63145 666 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 TMTC3Q6ZXV5 915 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 GUCA1BQ9UMX6 200 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 PRPF3O43395 683 aaKnown RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 OAS2P29728 719 aaKnown RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 SKIDA1Q1XH10 827 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 ZNF579Q8NAF0 562 aaKnown RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 SPATA20Q8TB22 786 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 NELFBQ8WX92 580 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 DCP1AQ9NPI6 582 aaPredicted RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 GNL3LQ9NVN8 582 aaKnown RBP17.03■□□□□ 0.32
USP28-214ENST00000545540 FAM53CQ9NYF3 392 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 HDAC6Q9UBN7 1215 aa17.03■□□□□ 0.32
USP28-214ENST00000545540 PLEKHG2Q9H7P9 1386 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 GRIK5Q16478 980 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 NCAPH2Q6IBW4 605 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 STX8Q9UNK0 236 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 ECM29Q5VYK3 1845 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 PRCPP42785 496 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 TFAP4Q01664 338 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 UBXN1Q04323 297 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 TBC1D9BQ66K14 1250 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 KANK3Q6NY19 840 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 TMEM60Q9H2L4 133 aa17.02■□□□□ 0.32
USP28-214ENST00000545540 BRMS1Q9HCU9 246 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms