RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.62□□□□□ -0.23
YBX3-216ENST00000544622 ZMYM6O95789 1325 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 MYPNQ86TC9 1320 aa13.62□□□□□ -0.23
YBX3-216ENST00000544622 PLIN4Q96Q06 1357 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 PRDM1O75626 825 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 ECM2O94769 699 aaPredicted RBP13.61□□□□□ -0.23
YBX3-216ENST00000544622 IRF5Q13568 498 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 TTC22Q5TAA0 569 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 ZNF444Q8N0Y2 327 aaPredicted RBP13.61□□□□□ -0.23
YBX3-216ENST00000544622 STK11IPQ8N1F8 1099 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 NEDD1Q8NHV4 660 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 SH2D4AQ9H788 454 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 RABGAP1Q9Y3P9 1069 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 CCDC171Q6TFL3 1326 aa13.61□□□□□ -0.23
YBX3-216ENST00000544622 MYH8P13535 1937 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 TNRC18O15417 2968 aaPredicted RBP13.6□□□□□ -0.23
YBX3-216ENST00000544622 SPDYE16A6NNV3 312 aaPredicted RBP13.6□□□□□ -0.23
YBX3-216ENST00000544622 TNPO2O14787 897 aaKnown RBP13.6□□□□□ -0.23
YBX3-216ENST00000544622 MGAMO43451 1857 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 NOVP48745 357 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 FLT3LGP49771 235 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 ERVK-9P63128 1117 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 ERVK-24P63145 666 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 PDE4BQ07343 736 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 COG2Q14746 738 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 SLC9C1Q4G0N8 1177 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 NBPF11Q86T75 865 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 PXYLP1Q8TE99 480 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 IL25Q9H293 177 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 INCENPQ9NQS7 918 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 MTMR4Q9NYA4 1195 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 HOXC10Q9NYD6 342 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 SYNPO2Q9UMS6 1093 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 ADAMTS5Q9UNA0 930 aa13.6□□□□□ -0.23
YBX3-216ENST00000544622 RLFQ13129 1914 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 HIP1O00291 1037 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 WDR46O15213 610 aaKnown RBP13.59□□□□□ -0.23
YBX3-216ENST00000544622 SLC3A2P08195 630 aaKnown RBP13.59□□□□□ -0.23
YBX3-216ENST00000544622 SOX10P56693 466 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 CTDSPL2Q05D32 466 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 CWC27Q6UX04 472 aaKnown RBP13.59□□□□□ -0.23
YBX3-216ENST00000544622 SPICE1Q8N0Z3 855 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 SH3TC2Q8TF17 1288 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 CEP95Q96GE4 821 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 BTBD7Q9P203 1132 aa13.59□□□□□ -0.23
YBX3-216ENST00000544622 F5H6K3 240 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 ORC4O43929 436 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 GRK4P32298 578 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 DSG3P32926 999 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 TFAP4Q01664 338 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 KLRC3Q07444 240 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 FAM47AQ5JRC9 791 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 RAET1EQ8TD07 263 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 USP6NLQ92738 828 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 COA7Q96BR5 231 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 NBPF3Q9H094 633 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 PORCNQ9H237 461 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 IL17RBQ9NRM6 502 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 CLIP2Q9UDT6 1046 aa13.58□□□□□ -0.24
YBX3-216ENST00000544622 DOCK3Q8IZD9 2030 aa13.57□□□□□ -0.24
YBX3-216ENST00000544622 POTEFA5A3E0 1075 aa13.57□□□□□ -0.24
YBX3-216ENST00000544622 MAPK4P31152 587 aa13.57□□□□□ -0.24
YBX3-216ENST00000544622 MFAP1P55081 439 aaKnown RBP13.57□□□□□ -0.24
YBX3-216ENST00000544622 SLAIN1Q8ND83 568 aa13.57□□□□□ -0.24
YBX3-216ENST00000544622 GOPCQ9HD26 462 aa13.57□□□□□ -0.24
YBX3-216ENST00000544622 ADCY3O60266 1144 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 TTLL1O95922 423 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 NDUFB10O96000 172 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 TSPY3P0CV98 308 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 TSPY8P0CW00 308 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 XRCC5P13010 732 aaKnown RBP13.56□□□□□ -0.24
YBX3-216ENST00000544622 MORN1Q5T089 497 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 CENPQQ7L2Z9 268 aaPredicted RBP13.56□□□□□ -0.24
YBX3-216ENST00000544622 GPR142Q7Z601 462 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 MB21D1Q8N884 522 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 GMCL1P1Q8NEA9 526 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 NKX2-3Q8TAU0 364 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 PAGR1Q9BTK6 254 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 DSCC1Q9BVC3 393 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 TANGO6Q9C0B7 1094 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 DIAPH3Q9NSV4 1193 aa13.56□□□□□ -0.24
YBX3-216ENST00000544622 PLXNB2O15031 1838 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 KIAA0100Q14667 2235 aaKnown RBP13.55□□□□□ -0.24
YBX3-216ENST00000544622 FLOT1O75955 427 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 PCP11498 1178 aaKnown RBP13.55□□□□□ -0.24
YBX3-216ENST00000544622 CHMLP26374 656 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 ATP2B2Q01814 1243 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 MLLT1Q03111 559 aaPredicted RBP13.55□□□□□ -0.24
YBX3-216ENST00000544622 MTFR1Q15390 333 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 REPS2Q8NFH8 660 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 STAG1Q8WVM7 1258 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 TCP11L1Q9NUJ3 509 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 FBXO28Q9NVF7 368 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 PPP1R9AQ9ULJ8 1098 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 A0A0G2JMZ2 1700 aa13.55□□□□□ -0.24
YBX3-216ENST00000544622 TSPY2A6NKD2 308 aa13.54□□□□□ -0.24
YBX3-216ENST00000544622 NMT2O60551 498 aa13.54□□□□□ -0.24
YBX3-216ENST00000544622 IGHA2P01877 340 aa13.54□□□□□ -0.24
YBX3-216ENST00000544622 ELNP15502 786 aa13.54□□□□□ -0.24
YBX3-216ENST00000544622 CCNA1P78396 465 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms