RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545		F5H6K3	240 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	SLC10A3	P09131	477 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	CETP	P11597	493 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	KLRC3	Q07444	240 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	SEC23A	Q15436	765 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	CCL15	Q16663	113 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	SLFN13	Q68D06	897 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	FASTKD5	Q7L8L6	764 aa	Known RBP	11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	CATIP	Q7Z7H3	387 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	SPICE1	Q8N0Z3	855 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	NUP133	Q8WUM0	1156 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	ANKS1A	Q92625	1134 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	BRF1	Q92994	677 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	MKL1	Q969V6	931 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	MTA3	Q9BTC8	594 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	KIAA1683	Q9H0B3	1180 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	SLC12A7	Q9Y666	1083 aa		11.9	□□□□□ -0.5
CPSF7-221	ENST00000543545	PAPPA2	Q9BXP8	1791 aa		11.9	□□□□□ -0.51
CPSF7-221	ENST00000543545	MANSC4	A6NHS7	340 aa	Predicted RBP	11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	LIFR	P42702	1097 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	NOG	Q13253	232 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	DGKZ	Q13574	1117 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	CCDC96	Q2M329	555 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	RCSD1	Q6JBY9	416 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	NOL8	Q76FK4	1167 aa	Known RBP	11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	PNMA1	Q8ND90	353 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	IL17RA	Q96F46	866 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	KIF2C	Q99661	725 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	LARP6	Q9BRS8	491 aa	Known RBP	11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	VCPKMT	Q9H867	229 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	LY9	Q9HBG7	655 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	SENP2	Q9HC62	589 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	EMILIN3	Q9NT22	766 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545	KCNH4	Q9UQ05	1017 aa		11.89	□□□□□ -0.51
CPSF7-221	ENST00000543545		A0A0G2JLL6	359 aa	Predicted RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	KLF18	A0A0U1RQI7	1052 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	FAM155A	B1AL88	458 aa	Predicted RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	ST18	O60284	1047 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	AOC2	O75106	756 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	NDUFB10	O96000	172 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	SLC1A4	P43007	532 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	NOV	P48745	357 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	VEGFB	P49765	207 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	KIF23	Q02241	960 aa	Predicted RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	APOBR	Q0VD83	1088 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	IK	Q13123	557 aa	Predicted RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	ANKRD1	Q15327	319 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	PRRT2	Q7Z6L0	340 aa	Predicted RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	RAB11FIP4	Q86YS3	637 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	SYNPO2	Q9UMS6	1093 aa		11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	DDX60L	Q5H9U9	1706 aa	Known RBP	11.88	□□□□□ -0.51
CPSF7-221	ENST00000543545	WDR33	Q9C0J8	1336 aa	Known RBP	11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	AK2	P54819	239 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	INHBE	P58166	350 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	SREBF2	Q12772	1141 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	SH3D19	Q5HYK7	790 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	FAM83B	Q5T0W9	1011 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	OTUD7B	Q6GQQ9	843 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	ZNF654	Q8IZM8	581 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	GMCL1P1	Q8NEA9	526 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	DCAF4	Q8WV16	495 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	BRI3BP	Q8WY22	251 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	LPAR1	Q92633	364 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	MS4A4A	Q96JQ5	239 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	NUP88	Q99567	741 aa	Predicted RBP	11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	MYL10	Q9BUA6	226 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	TANGO6	Q9C0B7	1094 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	GPCPD1	Q9NPB8	672 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	FOCAD	Q5VW36	1801 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	CDK5RAP2	Q96SN8	1893 aa		11.87	□□□□□ -0.51
CPSF7-221	ENST00000543545	GOLGA8B	A8MQT2	603 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L15	C9J2P7	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L13	C9JLJ4	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L11	C9JVI0	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L18	D6R9N7	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L22	D6RA61	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L17	D6RBQ6	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L19	D6RCP7	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L20	D6RJB6	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	WDR46	O15213	610 aa	Known RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	ZBTB43	O43298	467 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	DDAH1	O94760	285 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	PARP1	P09874	1014 aa	Known RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	CALM1	P0DP23	149 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	CALM2	P0DP24	149 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	CALM3	P0DP25	149 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	BMP3	P12645	472 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	VCAM1	P19320	739 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	RXRA	P19793	462 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	OSBP	P22059	807 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	IRX3	P78415	501 aa	Predicted RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	USP17L24	Q0WX57	530 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	PABPC4	Q13310	644 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	TOB2	Q14106	344 aa	Predicted RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	KIAA1755	Q5JYT7	1200 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	KCTD1	Q719H9	257 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	SGMS1	Q86VZ5	419 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	MICU3	Q86XE3	530 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms