RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RHBDL3P58872 404 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 NCAPHQ15003 741 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 PIK3AP1Q6ZUJ8 805 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 RASGRP2Q7LDG7 609 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 ZNF579Q8NAF0 562 aaKnown RBP18.69■□□□□ 0.58
COL4A1-204ENST00000543140 EPSTI1Q96J88 318 aa18.69■□□□□ 0.58
COL4A1-204ENST00000543140 APBA3O96018 575 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 PRR29P0C7W0 189 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 MDM2Q00987 491 aaPredicted RBP18.68■□□□□ 0.58
COL4A1-204ENST00000543140 ATP6V0A2Q9Y487 856 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 SMC2O95347 1197 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 GOLGA8HP0CJ92 632 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 TTC38Q5R3I4 469 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 TBC1D22AQ8WUA7 517 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 TMEM47Q9BQJ4 181 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 MXD3Q9BW11 206 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 MAD2L2Q9UI95 211 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 MYH1P12882 1939 aa18.68■□□□□ 0.58
COL4A1-204ENST00000543140 SRGNP10124 158 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 POSTNQ15063 836 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 DOK7Q18PE1 504 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 ANKS1AQ92625 1134 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 EYA3Q99504 573 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 IFNKQ9P0W0 207 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 PLCG2P16885 1265 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 BMP6P22004 513 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 PICALMQ13492 652 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 GRM4Q14833 912 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 MSL1Q68DK7 614 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 NLGN1Q8N2Q7 840 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 XPO4Q9C0E2 1151 aaKnown RBP18.67■□□□□ 0.58
COL4A1-204ENST00000543140 CPVLQ9H3G5 476 aa18.67■□□□□ 0.58
COL4A1-204ENST00000543140 SMTNL1A8MU46 457 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 PTGDRQ13258 359 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 SLC35G1Q2M3R5 365 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 SLF2Q8IX21 1173 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 DHX58Q96C10 678 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 ZC3H12CQ9C0D7 883 aaKnown RBP18.66■□□□□ 0.58
COL4A1-204ENST00000543140 HOOK1Q9UJC3 728 aaKnown RBP18.66■□□□□ 0.58
COL4A1-204ENST00000543140 DAGLAQ9Y4D2 1042 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 GOLGB1Q14789 3259 aaKnown RBP18.66■□□□□ 0.58
COL4A1-204ENST00000543140 LTBP1Q14766 1721 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 A0A087X0B3 334 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 MMP10P09238 476 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 ATP1A3P13637 1013 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 C16orf86Q6ZW13 317 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 TCP11L1Q9NUJ3 509 aa18.66■□□□□ 0.58
COL4A1-204ENST00000543140 DDX60LQ5H9U9 1706 aaKnown RBP18.66■□□□□ 0.58
COL4A1-204ENST00000543140 LRRC37AA6NMS7 1700 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 VWA3AA6NCI4 1184 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 CYTH3O43739 400 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 MCM7P33993 719 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 TPM4P67936 248 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 CERS3Q8IU89 383 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 LRRC8AQ8IWT6 810 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 RASGRP4Q8TDF6 673 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 SYMPKQ92797 1274 aaKnown RBP18.65■□□□□ 0.58
COL4A1-204ENST00000543140 FAM163AQ96GL9 167 aaPredicted RBP18.65■□□□□ 0.58
COL4A1-204ENST00000543140 ZNF287Q9HBT7 754 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 GAKO14976 1311 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 FAM205AQ6ZU69 1335 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 ACTN4O43707 911 aaKnown RBP18.65■□□□□ 0.58
COL4A1-204ENST00000543140 TYW1BQ6NUM6 668 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 TMC4Q7Z404 712 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 CERS5Q8N5B7 392 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 AKT1S1Q96B36 256 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 HSD3B7Q9H2F3 369 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 MAN1B1Q9UKM7 699 aa18.65■□□□□ 0.58
COL4A1-204ENST00000543140 CCDC178Q5BJE1 867 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 COA1Q9GZY4 146 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 SNED1Q8TER0 1413 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 IKBKBO14920 756 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 TPM2P07951 284 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 NPR1P16066 1061 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 SCNN1DP51172 638 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 DPP8Q6V1X1 898 aaPredicted RBP18.64■□□□□ 0.57
COL4A1-204ENST00000543140 HEATR3Q7Z4Q2 680 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 BLIDQ8IZY5 108 aa18.64■□□□□ 0.57
COL4A1-204ENST00000543140 AFMP43652 599 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 MYL5Q02045 173 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 SMARCE1Q969G3 411 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 FERMT2Q96AC1 680 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 TTF2Q9UNY4 1162 aaKnown RBP18.63■□□□□ 0.57
COL4A1-204ENST00000543140 UQCRHLA0A096LP55 91 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 UQCRHP07919 91 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 GNAQP50148 359 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 HSP90AA4PQ58FG1 418 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 CEP95Q96GE4 821 aa18.63■□□□□ 0.57
COL4A1-204ENST00000543140 PALM3A6NDB9 673 aaPredicted RBP18.62■□□□□ 0.57
COL4A1-204ENST00000543140 KLRF2D3W0D1 207 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 BMP15O95972 392 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 CALML3P27482 149 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 CASP1P29466 404 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 ATP2C1P98194 919 aaPredicted RBP18.62■□□□□ 0.57
COL4A1-204ENST00000543140 FANCCQ00597 558 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 WWC2Q6AWC2 1192 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 USP17L2Q6R6M4 530 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 AEBP2Q6ZN18 517 aaPredicted RBP18.62■□□□□ 0.57
COL4A1-204ENST00000543140 NEDD1Q8NHV4 660 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 ZNF622Q969S3 477 aaKnown RBP eCLIP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms