RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 CNTNAP4Q9C0A0 1308 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 STX6O43752 255 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 RPS6KB1P23443 525 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 ATP2B2Q01814 1243 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 DDR1Q08345 913 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 CCDC24Q8N4L8 307 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 SPEF2Q9C093 1822 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 TAF1P21675 1872 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 M0R2C6 588 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 CSF1RP07333 972 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 SMC1AQ14683 1233 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 TMCO3Q6UWJ1 677 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 CHST3Q7LGC8 479 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 USP48Q86UV5 1035 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 CCDC114Q96M63 670 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 SCLT1Q96NL6 688 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 UTP14AQ9BVJ6 771 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 PLA2G12BQ9BX93 195 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 CD248Q9HCU0 757 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 UBAP1Q9NZ09 502 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 DDX60Q8IY21 1712 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 GOLGB1Q14789 3259 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 VPS37CA5D8V6 355 aaPredicted RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 SPDYE3A6NKU9 549 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 MYCLP1P12525 358 aaPredicted RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 ZAP70P43403 619 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 KCNB1Q14721 858 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 NAA25Q14CX7 972 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 CLEC4GQ6UXB4 293 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 LDHAL6AQ6ZMR3 332 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 TMC6Q7Z403 805 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 FERMT3Q86UX7 667 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 DDX11Q96FC9 970 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 RGL1Q9NZL6 768 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 TPX2Q9ULW0 747 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 SH3TC1Q8TE82 1336 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 MAST3O60307 1309 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 WDR33Q9C0J8 1336 aaKnown RBP12.53□□□□□ -0.4
CDH3-203ENST00000542274 PDE8AO60658 829 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 NTSR2O95665 410 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 IRF5Q13568 498 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 TBC1D9BQ66K14 1250 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 KIAA1328Q86T90 577 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 OSBP2Q969R2 916 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 HDAC6Q9UBN7 1215 aa12.53□□□□□ -0.4
CDH3-203ENST00000542274 C4BP0C0L5 1744 aa12.52□□□□□ -0.4
CDH3-203ENST00000542274 RIC1Q4ADV7 1423 aa12.52□□□□□ -0.4
CDH3-203ENST00000542274 CIAO1O76071 339 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 ZSCAN22P10073 491 aaPredicted RBP12.52□□□□□ -0.41
CDH3-203ENST00000542274 METTL24Q5JXM2 366 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 TTC39AQ5SRH9 613 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 CEP135Q66GS9 1140 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 FAM196AQ6ZSG2 479 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 TRIM4Q9C037 500 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 SEC31BQ9NQW1 1179 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 HOMER3Q9NSC5 361 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 MKS1Q9NXB0 559 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.52□□□□□ -0.41
CDH3-203ENST00000542274 CHUKO15111 745 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 FIBPO43427 364 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 JAK2O60674 1132 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 RPS6KA4O75676 772 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 SMARCA1P28370 1054 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 FAM114A1Q8IWE2 563 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 FBXO41Q8TF61 875 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 PARD6BQ9BYG5 372 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 MTMR6Q9Y217 621 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.52□□□□□ -0.41
CDH3-203ENST00000542274 SCN7AQ01118 1682 aa12.52□□□□□ -0.41
CDH3-203ENST00000542274 CASZ1Q86V15 1759 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 COL4A1P02462 1669 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 E2F6O75461 281 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 SLU7O95391 586 aaKnown RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 CAVIN2O95810 425 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 MMEP08473 750 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 IBSPP21815 317 aaPredicted RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 HOXA10P31260 410 aaPredicted RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 Q6ZUG5 572 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 C3orf67Q6ZVT6 689 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 NUP133Q8WUM0 1156 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 NEK1Q96PY6 1258 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 GPR108Q9NPR9 543 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 CNNM1Q9NRU3 951 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 RTCBQ9Y3I0 505 aaKnown RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 C4AP0C0L4 1744 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 HSPD1P10809 573 aaKnown RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 PSMA5P28066 241 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 HAND2P61296 217 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 DNM1Q05193 864 aaKnown RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 ERCC6LQ2NKX8 1250 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 ERFEQ4G0M1 354 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 FILIP1LQ4L180 1135 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 ZMYM1Q5SVZ6 1142 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 ARHGAP27Q6ZUM4 889 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 ARHGAP22Q7Z5H3 698 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 SDCCAG8Q86SQ7 713 aaPredicted RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 TCP11Q8WWU5 503 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 RSPH1Q8WYR4 309 aa12.51□□□□□ -0.41
CDH3-203ENST00000542274 SYAP1Q96A49 352 aaPredicted RBP12.51□□□□□ -0.41
CDH3-203ENST00000542274 CABS1Q96KC9 395 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms