RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 C8orf76Q96K31 380 aa20.58■□□□□ 0.89
CLIP1-215ENST00000541108 GGA3Q9NZ52 723 aa20.58■□□□□ 0.89
CLIP1-215ENST00000541108 GDF11O95390 407 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 BAG4O95429 457 aaKnown RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 GH2P01242 217 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 PARP1P09874 1014 aaKnown RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 EEF2P13639 858 aaKnown RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 CAP2P40123 477 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 RRP1BQ14684 758 aaKnown RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 SEPT2Q15019 361 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 USP50Q70EL3 339 aaPredicted RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 CDC37L1Q7L3B6 337 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 ALG1Q9BT22 464 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 ZSCAN16Q9H4T2 348 aaPredicted RBP20.58■□□□□ 0.88
CLIP1-215ENST00000541108 GINM1Q9NU53 330 aa20.58■□□□□ 0.88
CLIP1-215ENST00000541108 PLEKHA8P1O95397 391 aa20.57■□□□□ 0.88
CLIP1-215ENST00000541108 PDHBP11177 359 aa20.57■□□□□ 0.88
CLIP1-215ENST00000541108 ICA1Q05084 483 aa20.57■□□□□ 0.88
CLIP1-215ENST00000541108 FOXD4L5Q5VV16 416 aaPredicted RBP20.57■□□□□ 0.88
CLIP1-215ENST00000541108 DCAF15Q66K64 600 aa20.57■□□□□ 0.88
CLIP1-215ENST00000541108 CMTR1Q8N1G2 835 aaKnown RBP20.57■□□□□ 0.88
CLIP1-215ENST00000541108 CCDC82Q8N4S0 544 aa20.57■□□□□ 0.88
CLIP1-215ENST00000541108 SRBD1Q8N5C6 995 aaKnown RBP20.57■□□□□ 0.88
CLIP1-215ENST00000541108 FOXD4L4Q8WXT5 416 aaPredicted RBP20.57■□□□□ 0.88
CLIP1-215ENST00000541108 MYH4Q9Y623 1939 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 PHF20L1A8MW92 1017 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 ASNSP08243 561 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 MCM4P33991 863 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 CLEC10AQ8IUN9 316 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 SIAH1Q8IUQ4 282 aa20.56■□□□□ 0.88
CLIP1-215ENST00000541108 ZC3H15Q8WU90 426 aaKnown RBP20.56■□□□□ 0.88
CLIP1-215ENST00000541108 SCAF8Q9UPN6 1271 aaKnown RBP20.56■□□□□ 0.88
CLIP1-215ENST00000541108 JAG1P78504 1218 aa20.55■□□□□ 0.88
CLIP1-215ENST00000541108 ASPRV1Q53RT3 343 aa20.55■□□□□ 0.88
CLIP1-215ENST00000541108 LRRC47Q8N1G4 583 aaKnown RBP20.55■□□□□ 0.88
CLIP1-215ENST00000541108 STAG2Q8N3U4 1231 aa20.55■□□□□ 0.88
CLIP1-215ENST00000541108 ZBTB21Q9ULJ3 1066 aa20.55■□□□□ 0.88
CLIP1-215ENST00000541108 V9GY48 417 aaPredicted RBP20.55■□□□□ 0.88
CLIP1-215ENST00000541108 CNTNAP5Q8WYK1 1306 aa20.55■□□□□ 0.88
CLIP1-215ENST00000541108 IQCA1LA6NCM1 817 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 KLRF2D3W0D1 207 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 GOLGA6L22H0YM25 854 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 TRIM29Q14134 588 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 GPATCH4Q5T3I0 446 aaKnown RBP20.54■□□□□ 0.88
CLIP1-215ENST00000541108 NBPF12Q5TAG4 269 aaPredicted RBP20.54■□□□□ 0.88
CLIP1-215ENST00000541108 DCPSQ96C86 337 aaKnown RBP20.54■□□□□ 0.88
CLIP1-215ENST00000541108 SPZ1Q9BXG8 430 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 SCN4AP35499 1836 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 CTNND1O60716 968 aaKnown RBP20.54■□□□□ 0.88
CLIP1-215ENST00000541108 XBP1P17861 261 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 EPHX2P34913 555 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 ATP2B2Q01814 1243 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 SHROOM1Q2M3G4 852 aaPredicted RBP20.54■□□□□ 0.88
CLIP1-215ENST00000541108 SUPT20HL1Q3ZLR7 823 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 USP17L2Q6R6M4 530 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 GMCL1P1Q8NEA9 526 aa20.54■□□□□ 0.88
CLIP1-215ENST00000541108 MYH6P13533 1939 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 DDX11L8A8MPP1 907 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 USP17L5A8MUK1 530 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 PKN1Q16512 942 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 ZNF341Q9BYN7 854 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 ARHGEF10LQ9HCE6 1279 aa20.53■□□□□ 0.88
CLIP1-215ENST00000541108 PTMSP20962 102 aa20.52■□□□□ 0.88
CLIP1-215ENST00000541108 KRT40Q6A162 431 aa20.52■□□□□ 0.88
CLIP1-215ENST00000541108 AIFM3Q96NN9 605 aa20.52■□□□□ 0.88
CLIP1-215ENST00000541108 ZNF112Q9UJU3 913 aa20.52■□□□□ 0.88
CLIP1-215ENST00000541108 MTMR7Q9Y216 660 aa20.52■□□□□ 0.88
CLIP1-215ENST00000541108 POLR2AP24928 1970 aaKnown RBP20.52■□□□□ 0.88
CLIP1-215ENST00000541108 ZNF543Q08ER8 600 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 FERMT3Q86UX7 667 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 SULF1Q8IWU6 871 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 DCAF4Q8WV16 495 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 RIOX1Q9H6W3 641 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 TMX2Q9Y320 296 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 F5H6K3 240 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 UBE2Q2LH0YL09 131 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 CYTH3O43739 400 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 GOLGA8HP0CJ92 632 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 KLRC3Q07444 240 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 RESTQ13127 1097 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 PFKFB3Q16875 520 aaPredicted RBP20.51■□□□□ 0.87
CLIP1-215ENST00000541108 PNMA8AQ86V59 439 aaPredicted RBP20.51■□□□□ 0.87
CLIP1-215ENST00000541108 FAM177A1Q8N128 213 aaPredicted RBP20.51■□□□□ 0.87
CLIP1-215ENST00000541108 GMCL1Q96IK5 515 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 SH2D4AQ9H788 454 aa20.51■□□□□ 0.87
CLIP1-215ENST00000541108 SCG2P13521 617 aa20.5■□□□□ 0.87
CLIP1-215ENST00000541108 GUCY1B3Q02153 619 aa20.5■□□□□ 0.87
CLIP1-215ENST00000541108 SLFN13Q68D06 897 aa20.5■□□□□ 0.87
CLIP1-215ENST00000541108 MCTP1Q6DN14 999 aa20.5■□□□□ 0.87
CLIP1-215ENST00000541108 WDR90Q96KV7 1748 aa20.5■□□□□ 0.87
CLIP1-215ENST00000541108 A0A1W2PRG0 241 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 SLC1A4P43007 532 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 FOSBP53539 338 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 OTUD7BQ6GQQ9 843 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 BRAPQ7Z569 592 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 TAF1DQ9H5J8 278 aaPredicted RBP20.49■□□□□ 0.87
CLIP1-215ENST00000541108 SH3GLB2Q9NR46 395 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 GJB4Q9NTQ9 266 aa20.49■□□□□ 0.87
CLIP1-215ENST00000541108 MMP1P03956 469 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 SAFBQ15424 915 aaKnown RBP eCLIP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms