RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 MFSD3Q96ES6 412 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 CAAP1Q9H8G2 361 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 ST7Q9NRC1 585 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 CD2APQ9Y5K6 639 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 PTCH2Q9Y6C5 1203 aa6.94□□□□□ -1.3
PRKDC-209ENST00000540819 FAM170BA6NMN3 283 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 GADD45BO75293 160 aaPredicted RBP6.93□□□□□ -1.3
PRKDC-209ENST00000540819 RAB6AP20340 208 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 SOX5P35711 763 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 POU5F1BQ06416 359 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 FZD5Q13467 585 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 CCNJLQ8IV13 435 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 AGBL5Q8NDL9 886 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 ANKRD24Q8TF21 1146 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 PPM1EQ8WY54 764 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 NKD1Q969G9 470 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 RHOVQ96L33 236 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 CORO1BQ9BR76 489 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 LIN7BQ9HAP6 207 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 LRRC4CQ9HCJ2 640 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 NPHS2Q9NP85 383 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 PPP4R2Q9NY27 417 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 SWAP70Q9UH65 585 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 WASHC2CQ9Y4E1 1318 aa6.93□□□□□ -1.3
PRKDC-209ENST00000540819 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-209ENST00000540819 TRIM37O94972 964 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 RASGRP1O95267 797 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 FGAP02671 866 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 ATF3P18847 181 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 ASPAP45381 313 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 EIF6P56537 245 aaKnown RBP6.92□□□□□ -1.3
PRKDC-209ENST00000540819 MCL1Q07820 350 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 APOBRQ0VD83 1088 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 FXNQ16595 210 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 ZNF423Q2M1K9 1284 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 SPRED3Q2MJR0 410 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 CT47A1Q5JQC4 288 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-209ENST00000540819 SLITRK4Q8IW52 837 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 GALNT12Q8IXK2 581 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 MYO1HQ8N1T3 1032 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 FAM169BQ8N8A8 192 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 FLCNQ8NFG4 579 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 OR6P1Q8NGX9 317 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 ZNF512BQ96KM6 892 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-209ENST00000540819 FAM126AQ9BYI3 521 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-209ENST00000540819 PRDM10Q9NQV6 1147 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 UBP1Q9NZI7 540 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 ACTL7BQ9Y614 415 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 KDM2BQ8NHM5 1336 aa6.92□□□□□ -1.3
PRKDC-209ENST00000540819 A0A1W2PP55 124 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 F6X3S4 739 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 BPNT1O95861 308 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 SCGB1D2O95969 90 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 FOSP01100 380 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-209ENST00000540819 MYCLP1P12525 358 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-209ENST00000540819 GARTP22102 1010 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 GIPRP48546 466 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 NFKB2Q00653 900 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 PRPF40BQ6NWY9 871 aaKnown RBP6.91□□□□□ -1.3
PRKDC-209ENST00000540819 CCDC81Q6ZN84 652 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 PCGF5Q86SE9 256 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 AMOTL1Q8IY63 956 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 NINJ1Q92982 152 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 ZNF669Q96BR6 464 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-209ENST00000540819 ARPC5LQ9BPX5 153 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 FBXO9Q9UK97 447 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-209ENST00000540819 PPM1HQ9ULR3 514 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 AP4E1Q9UPM8 1137 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 RPS6KL1Q9Y6S9 549 aa6.91□□□□□ -1.3
PRKDC-209ENST00000540819 SHTN1A0MZ66 631 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 HSP90AA1P07900 732 aaKnown RBP6.9□□□□□ -1.3
PRKDC-209ENST00000540819 CD53P19397 219 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 BDNFP23560 247 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 GRIA4P48058 902 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 GRM2Q14416 872 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 SV2BQ7L1I2 683 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 NIM1KQ8IY84 436 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 C3orf58Q8NDZ4 430 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 ZSWIM2Q8NEG5 633 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 CRBNQ96SW2 442 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 TRIM56Q9BRZ2 755 aaKnown RBP6.9□□□□□ -1.3
PRKDC-209ENST00000540819 MTA3Q9BTC8 594 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 NRSN2Q9GZP1 204 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 CHST12Q9NRB3 414 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 ANAPC4Q9UJX5 808 aa6.9□□□□□ -1.3
PRKDC-209ENST00000540819 NRDCO43847 1150 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 JUNBP17275 347 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-209ENST00000540819 PDE3AQ14432 1141 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 LRRC41Q15345 812 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 SNAP47Q5SQN1 464 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 WDR78Q5VTH9 848 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 WWC2Q6AWC2 1192 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 ZNF765Q7L2R6 523 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 CHPFQ8IZ52 775 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 PHC3Q8NDX5 983 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 ST13P5Q8NFI4 369 aaPredicted RBP6.89□□□□□ -1.31
PRKDC-209ENST00000540819 SVIPQ8NHG7 77 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 FBXO41Q8TF61 875 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 GATA6Q92908 595 aa6.89□□□□□ -1.31
PRKDC-209ENST00000540819 TCF12Q99081 682 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms