RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SHCBP1Q8NEM2 672 aa14.19□□□□□ -0.14
CLSTN3-209ENST00000539982 FERMT2Q96AC1 680 aa14.19□□□□□ -0.14
CLSTN3-209ENST00000539982 TACC3Q9Y6A5 838 aa14.19□□□□□ -0.14
CLSTN3-209ENST00000539982 TTC28Q96AY4 2481 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 MYH1P12882 1939 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 COBLO75128 1261 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 ERCC3P19447 782 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 SHMT1P34896 483 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 PRAMEF19Q5SWL8 479 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 MIGA1Q8NAN2 632 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 SPATC1LQ9H0A9 340 aa14.18□□□□□ -0.14
CLSTN3-209ENST00000539982 MYO5AQ9Y4I1 1855 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 ZNF316A6NFI3 1004 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 IPO8O15397 1037 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 IDH1O75874 414 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 PLCD1P51178 756 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 OS9Q13438 667 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 POLA2Q14181 598 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 SEPT2Q15019 361 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 TMED8Q6PL24 325 aaPredicted RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 ABRAQ8N0Z2 381 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 RNPC3Q96LT9 517 aaKnown RBP14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 MROH8Q9H579 483 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 PHF24Q9UPV7 400 aa14.17□□□□□ -0.14
CLSTN3-209ENST00000539982 ZNF236Q9UL36 1845 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 A0A1W2PRG0 241 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 ITGB8P26012 769 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 EPHB4P54760 987 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 FAM47AQ5JRC9 791 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 MAGEB6Q8N7X4 407 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 MB21D1Q8N884 522 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 MAML3Q96JK9 1138 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 TANGO6Q9C0B7 1094 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 CDH23Q9H251 3354 aa14.16□□□□□ -0.14
CLSTN3-209ENST00000539982 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 KIAA0355O15063 1070 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 SURF6O75683 361 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 CLTBP09497 229 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 DSG3P32926 999 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 ATP8B2P98198 1209 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 GRIN2CQ14957 1233 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 TJAP1Q5JTD0 557 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 NCAPG2Q86XI2 1143 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 SSH3Q8TE77 659 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 XPNPEP3Q9NQH7 507 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 NRBP1Q9UHY1 535 aa14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 DBNLQ9UJU6 430 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-209ENST00000539982 TNFRSF10AO00220 468 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 POLR3DP05423 398 aaPredicted RBP14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 RARBP10826 455 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 FCER1AP12319 257 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 TRIM27P14373 513 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 RAG1P15918 1043 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 GABPAQ06546 454 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 MAP3K12Q12852 859 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 PLS1Q14651 629 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 RNF180Q86T96 592 aa14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 CCDC8Q9H0W5 538 aaPredicted RBP14.14□□□□□ -0.15
CLSTN3-209ENST00000539982 MPHOSPH10O00566 681 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 COL9A1P20849 921 aa14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 FPGSQ05932 587 aa14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 USP38Q8NB14 1042 aa14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 EAF2Q96CJ1 260 aaPredicted RBP14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 RIOK1Q9BRS2 568 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 TMEM39AQ9NV64 488 aa14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 TLR7Q9NYK1 1049 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 TNNQ9UQP3 1299 aa14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 NOP58Q9Y2X3 529 aaKnown RBP14.13□□□□□ -0.15
CLSTN3-209ENST00000539982 PQBP1O60828 265 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 BCAR3O75815 825 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 FLOT1O75955 427 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 SLC25A27O95847 323 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 PGK1P00558 417 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 DNAJB2P25686 324 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 KIAA1755Q5JYT7 1200 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 FRAT1Q92837 279 aaPredicted RBP14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 CLUAP1Q96AJ1 413 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 TOX2Q96NM4 488 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 ZNF576Q9H609 170 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 ANTXR1Q9H6X2 564 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 SMCHD1A6NHR9 2005 aa14.12□□□□□ -0.15
CLSTN3-209ENST00000539982 MAGEB6P1A0A0J9YX57 407 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 A0A1W2PQ45 241 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 A0A1W2PQY0 241 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 FAAP100Q0VG06 881 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 TMEM179Q6ZVK1 233 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 ANKRD33Q7Z3H0 272 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 SIAH1Q8IUQ4 282 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 ATG4CQ96DT6 458 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 TINF2Q9BSI4 451 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 TSEN34Q9BSV6 310 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 MCM9Q9NXL9 1143 aa14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 DIS3Q9Y2L1 958 aaKnown RBP14.11□□□□□ -0.15
CLSTN3-209ENST00000539982 A0A0G2JMZ2 1700 aa14.1□□□□□ -0.15
CLSTN3-209ENST00000539982 ZNFX1Q9P2E3 1918 aaKnown RBP14.1□□□□□ -0.15
CLSTN3-209ENST00000539982 DCDC2CA8MYV0 355 aa14.1□□□□□ -0.15
CLSTN3-209ENST00000539982 TMEM132BQ14DG7 1078 aa14.1□□□□□ -0.15
CLSTN3-209ENST00000539982 ZNF792Q3KQV3 632 aa14.1□□□□□ -0.15
CLSTN3-209ENST00000539982 SLC44A5Q8NCS7 719 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms