RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 CPLX2Q6PUV4 134 aaKnown RBP12.44□□□□□ -0.42
LEMD3-202ENST00000539442 MICU3Q86XE3 530 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 NECAB1Q8N987 351 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 PNMA1Q8ND90 353 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 ZNF341Q9BYN7 854 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 NYAP2Q9P242 653 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 SCAF8Q9UPN6 1271 aaKnown RBP12.44□□□□□ -0.42
LEMD3-202ENST00000539442 MYH8P13535 1937 aa12.44□□□□□ -0.42
LEMD3-202ENST00000539442 CPLX1O14810 134 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 CDKL5O76039 1030 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 GDF11O95390 407 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 GH2P01242 217 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 CAP2P40123 477 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 CCT2P78371 535 aaKnown RBP12.43□□□□□ -0.42
LEMD3-202ENST00000539442 HMGN5P82970 282 aaKnown RBP12.43□□□□□ -0.42
LEMD3-202ENST00000539442 TROAPQ12815 778 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 RTN1Q16799 776 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 EAPPQ56P03 285 aaPredicted RBP12.43□□□□□ -0.42
LEMD3-202ENST00000539442 MIGA2Q7L4E1 593 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 KRT26Q7Z3Y9 468 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 FANCBQ8NB91 859 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 SPRYD3Q8NCJ5 442 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 TMEM47Q9BQJ4 181 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 RBM28Q9NW13 759 aaKnown RBP12.43□□□□□ -0.42
LEMD3-202ENST00000539442 ZNF112Q9UJU3 913 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 ZBTB21Q9ULJ3 1066 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 CIZ1Q9ULV3 898 aaPredicted RBP12.43□□□□□ -0.42
LEMD3-202ENST00000539442 SMC3Q9UQE7 1217 aa12.43□□□□□ -0.42
LEMD3-202ENST00000539442 PHF20L1A8MW92 1017 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 CTNND1O60716 968 aaKnown RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 ASNSP08243 561 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 PDIA4P13667 645 aaKnown RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 KIF5BP33176 963 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 GUCY1A2P33402 732 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 DDIT3P35638 169 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 ICA1Q05084 483 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 RRP1BQ14684 758 aaKnown RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 SEPT2Q15019 361 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 CDC37L1Q7L3B6 337 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 NSUN7Q8NE18 718 aaKnown RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 CTCFLQ8NI51 663 aaPredicted RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 SMARCC2Q8TAQ2 1214 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 NUP133Q8WUM0 1156 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 MKL1Q969V6 931 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 MYL10Q9BUA6 226 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 NCOA5Q9HCD5 579 aaKnown RBP12.42□□□□□ -0.42
LEMD3-202ENST00000539442 SSC5DA1L4H1 1573 aa12.42□□□□□ -0.42
LEMD3-202ENST00000539442 UTRNP46939 3433 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 ADM5C9JUS6 153 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 MAP3K13O43283 966 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 RXRAP19793 462 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 CDC27P30260 824 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 NF2P35240 595 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 GRM4Q14833 912 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 RAB11FIP4Q86YS3 637 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 ARHGEF10LQ9HCE6 1279 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 FAM217BQ9NTX9 383 aaPredicted RBP12.41□□□□□ -0.42
LEMD3-202ENST00000539442 CLIP2Q9UDT6 1046 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 KIF3AQ9Y496 699 aa12.41□□□□□ -0.42
LEMD3-202ENST00000539442 PTPDC1A2A3K4 754 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 CTDNEP1O95476 244 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 SNHG28P0DPA3 235 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 EEF2P13639 858 aaKnown RBP12.4□□□□□ -0.42
LEMD3-202ENST00000539442 IFNAR1P17181 557 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 GJB2P29033 226 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 ADD1P35611 737 aaKnown RBP12.4□□□□□ -0.42
LEMD3-202ENST00000539442 GNAQP50148 359 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 JAG1P78504 1218 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 RAB3GAP1Q15042 981 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 NOL9Q5SY16 702 aaKnown RBP12.4□□□□□ -0.42
LEMD3-202ENST00000539442 PRAMEF18Q5VWM3 479 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 USP48Q86UV5 1035 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 LDHDQ86WU2 507 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 CCDC144CPQ8IYA2 1237 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 KLRG1Q96E93 195 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 CDCA5Q96FF9 252 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 SH2D4AQ9H788 454 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 RRAGCQ9HB90 399 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 CHMP5Q9NZZ3 219 aa12.4□□□□□ -0.42
LEMD3-202ENST00000539442 STK36Q9NRP7 1315 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 PPP1R12BO60237 982 aaPredicted RBP12.39□□□□□ -0.43
LEMD3-202ENST00000539442 PDCP20941 246 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 NTRK3Q16288 839 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 SHROOM1Q2M3G4 852 aaPredicted RBP12.39□□□□□ -0.43
LEMD3-202ENST00000539442 ASPRV1Q53RT3 343 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 TMTC3Q6ZXV5 915 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 CLEC10AQ8IUN9 316 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 SCYL3Q8IZE3 742 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 LRRC47Q8N1G4 583 aaKnown RBP12.39□□□□□ -0.43
LEMD3-202ENST00000539442 GMCL1P1Q8NEA9 526 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 WRNIP1Q96S55 665 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 LZTS2Q9BRK4 669 aa12.39□□□□□ -0.43
LEMD3-202ENST00000539442 JAK2O60674 1132 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 PARP1P09874 1014 aaKnown RBP12.38□□□□□ -0.43
LEMD3-202ENST00000539442 PDHBP11177 359 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 SMARCA1P28370 1054 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 INPP5BP32019 993 aa12.38□□□□□ -0.43
LEMD3-202ENST00000539442 NUCB2P80303 420 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms