RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 LZTFL1Q9NQ48 299 aa13.11□□□□□ -0.31
SYNE1-234ENST00000536990 WNT7AO00755 349 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 HNRNPH2P55795 449 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 ST5P78524 1137 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 ERFEQ4G0M1 354 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 RASGRP2Q7LDG7 609 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 PPFIBP1Q86W92 1011 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SYMPKQ92797 1274 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 RIOK1Q9BRS2 568 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 PHF20Q9BVI0 1012 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CCDC151A5D8V7 595 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SMIM22K7EJ46 135 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SEMA3EO15041 775 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 MFAP3LO75121 409 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 DYNLL1P63167 89 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 LONRF2Q1L5Z9 754 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CLEC4GQ6UXB4 293 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CCDC34Q96HJ3 373 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 ZSCAN10Q96SZ4 725 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 VPS54Q9P1Q0 977 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 RREB1Q92766 1687 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 WTIPA6NIX2 430 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CHMP4BP1P59074 171 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 BRD3Q15059 726 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SF3B3Q15393 1217 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 IFIT1BQ5T764 474 aaKnown RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CATIPQ7Z7H3 387 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SMYD4Q8IYR2 804 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 ENAHQ8N8S7 591 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CPLX3Q8WVH0 158 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 SMARCC1Q92922 1105 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 GSDMAQ96QA5 445 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 BSDC1Q9NW68 430 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-234ENST00000536990 CDC23Q9UJX2 597 aa13.1□□□□□ -0.31
SYNE1-234ENST00000536990 ROBO1Q9Y6N7 1651 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 BAZ2AQ9UIF9 1905 aaKnown RBP13.09□□□□□ -0.31
SYNE1-234ENST00000536990 COL22A1Q8NFW1 1626 aaPredicted RBP13.09□□□□□ -0.31
SYNE1-234ENST00000536990 MAP2K7O14733 419 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 IQCA1Q86XH1 822 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 CTAGE1Q96RT6 745 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 ANKZF1Q9H8Y5 726 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 ITIH6Q6UXX5 1313 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 CYP2D7A0A087X1C5 515 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 GYPCP04921 128 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 CASP14P31944 242 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 KRT2P35908 639 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 C3orf67Q6ZVT6 689 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 NEK11Q8NG66 645 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 FERMT2Q96AC1 680 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 BRIP1Q9BX63 1249 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 MINPP1Q9UNW1 487 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 COL4A1P02462 1669 aa13.09□□□□□ -0.31
SYNE1-234ENST00000536990 MYH8P13535 1937 aa13.08□□□□□ -0.31
SYNE1-234ENST00000536990 TAF1P21675 1872 aa13.08□□□□□ -0.31
SYNE1-234ENST00000536990 PRPF3O43395 683 aaKnown RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 KIF5CO60282 957 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 GTF2E1P29083 439 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 FXR1P51114 621 aaKnown RBP eCLIP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 TNFRSF25Q93038 417 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 FAM84BQ96KN1 310 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 ZSWIM4Q9H7M6 989 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 PRDM1O75626 825 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 NPY5RQ15761 445 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 HNRNPLLQ8WVV9 542 aaKnown RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 CCDC51Q96ER9 411 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 RBM28Q9NW13 759 aaKnown RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 V9GY48 417 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 CACNA1SQ13698 1873 aa13.08□□□□□ -0.32
SYNE1-234ENST00000536990 COL1A1P02452 1464 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-234ENST00000536990 hCG_1642624A0A1W2PR95 340 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 H3BQF6 201 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 TULP2O00295 520 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 BMP15O95972 392 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 PCP11498 1178 aaKnown RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 NOM1Q5C9Z4 860 aaKnown RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 ZNF569Q5MCW4 686 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CEP112Q8N8E3 955 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 MSANTD4Q8NCY6 345 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 RAB21Q9UL25 225 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CICQ96RK0 1608 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 KCNQ2O43526 872 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 PLEKHA8P1O95397 391 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CALM1P0DP23 149 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CALM2P0DP24 149 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CALM3P0DP25 149 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 USP5P45974 858 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 TUBB2AQ13885 445 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 FILIP1LQ4L180 1135 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 BICDL1Q6ZP65 573 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CNGA4Q8IV77 575 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 TXLNBQ8N3L3 684 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 TUBB2BQ9BVA1 445 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 PUF60Q9UHX1 559 aaKnown RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 XDHP47989 1333 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 AHDC1Q5TGY3 1603 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 LRRC10BA6NIK2 292 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 ZNF174Q15697 407 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 E2F4Q16254 413 aa13.07□□□□□ -0.32
SYNE1-234ENST00000536990 BEND6Q5SZJ8 279 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-234ENST00000536990 CTR9Q6PD62 1173 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms