RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ANKRD13CQ8N6S4 541 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 LPAR1Q92633 364 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 RPAP3Q9H6T3 665 aaPredicted RBP15.42■□□□□ 0.06
VPS28-216ENST00000533806 TXNRD2Q9NNW7 524 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 PTPN22Q9Y2R2 807 aa15.42■□□□□ 0.06
VPS28-216ENST00000533806 PSMC4P43686 418 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 IRX3P78415 501 aaPredicted RBP15.41■□□□□ 0.06
VPS28-216ENST00000533806 TFAP4Q01664 338 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 ARHGEF6Q15052 776 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 FAM47AQ5JRC9 791 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 NKX2-3Q8TAU0 364 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 CEP95Q96GE4 821 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 SH2D4AQ9H788 454 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 IL17RBQ9NRM6 502 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 SYNPO2Q9UMS6 1093 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 HPS5Q9UPZ3 1129 aa15.41■□□□□ 0.06
VPS28-216ENST00000533806 CNMDO75829 334 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 PCP11498 1178 aaKnown RBP15.4■□□□□ 0.06
VPS28-216ENST00000533806 KIF22Q14807 665 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 TBC1D10CQ8IV04 446 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 STAG1Q8WVM7 1258 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 RUFY2Q8WXA3 655 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 PPP4R2Q9NY27 417 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 CLIP2Q9UDT6 1046 aa15.4■□□□□ 0.06
VPS28-216ENST00000533806 CENPFP49454 3210 aa15.39■□□□□ 0.06
VPS28-216ENST00000533806 SPDYE16A6NNV3 312 aaPredicted RBP15.39■□□□□ 0.05
VPS28-216ENST00000533806 F5H6K3 240 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 PEX10O60683 326 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 TSPY3P0CV98 308 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 TSPY8P0CW00 308 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 HAND2P61296 217 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 KLRC3Q07444 240 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 COG2Q14746 738 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 Q3C1V9 767 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 AKNAD1Q5T1N1 836 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 SPICE1Q8N0Z3 855 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 GTF3C2Q8WUA4 911 aaPredicted RBP15.39■□□□□ 0.05
VPS28-216ENST00000533806 RABGAP1Q9Y3P9 1069 aa15.39■□□□□ 0.05
VPS28-216ENST00000533806 ZNF213O14771 459 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 WDR46O15213 610 aaKnown RBP15.38■□□□□ 0.05
VPS28-216ENST00000533806 NMT2O60551 498 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 TTLL1O95922 423 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 PRMT2P55345 433 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 ATP2B2Q01814 1243 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 PTH1RQ03431 593 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 GMCL1P1Q8NEA9 526 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 GPRC5AQ8NFJ5 357 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 GOPCQ9HD26 462 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 TCP11L1Q9NUJ3 509 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 HOXC10Q9NYD6 342 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 SRRDQ9UH36 339 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 CTNNA3Q9UI47 895 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 ADAMTS5Q9UNA0 930 aa15.38■□□□□ 0.05
VPS28-216ENST00000533806 TSPY2A6NKD2 308 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 FMNL1O95466 1100 aaPredicted RBP15.37■□□□□ 0.05
VPS28-216ENST00000533806 NDUFB10O96000 172 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 DSG3P32926 999 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 NT5C2P49902 561 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 FCGRTP55899 365 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 ERVK-9P63128 1117 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 ERVK-24P63145 666 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 MFSD6Q6ZSS7 791 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 MAP4K1Q92918 833 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 BTBD7Q9P203 1132 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 PTCH2Q9Y6C5 1203 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 MYPNQ86TC9 1320 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 MYH8P13535 1937 aa15.37■□□□□ 0.05
VPS28-216ENST00000533806 ZSWIM8A7E2V4 1837 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 RANBP6O60518 1105 aaKnown RBP15.36■□□□□ 0.05
VPS28-216ENST00000533806 RCSD1Q6JBY9 416 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 ESYT1Q9BSJ8 1104 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 TANGO6Q9C0B7 1094 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 RNF41Q9H4P4 317 aaPredicted RBP15.36■□□□□ 0.05
VPS28-216ENST00000533806 GJD2Q9UKL4 321 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 GABRQQ9UN88 632 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 NEDD4P46934 1319 aa15.36■□□□□ 0.05
VPS28-216ENST00000533806 RLFQ13129 1914 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 ECM2O94769 699 aaPredicted RBP15.35■□□□□ 0.05
VPS28-216ENST00000533806 HOXD10P28358 340 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 PRKCZQ05513 592 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 IMMTQ16891 758 aaKnown RBP15.35■□□□□ 0.05
VPS28-216ENST00000533806 PPP4R3BQ5MIZ7 849 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 FAM83BQ5T0W9 1011 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 ARMC5Q96C12 935 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 NUP88Q99567 741 aaPredicted RBP15.35■□□□□ 0.05
VPS28-216ENST00000533806 LSG1Q9H089 658 aaKnown RBP15.35■□□□□ 0.05
VPS28-216ENST00000533806 PORCNQ9H237 461 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 FBXO28Q9NVF7 368 aa15.35■□□□□ 0.05
VPS28-216ENST00000533806 TNPO2O14787 897 aaKnown RBP15.34■□□□□ 0.05
VPS28-216ENST00000533806 FLOT1O75955 427 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 CYP21A2P08686 494 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 IRF5Q13568 498 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 RRP12Q5JTH9 1297 aaKnown RBP15.34■□□□□ 0.05
VPS28-216ENST00000533806 LRRC47Q8N1G4 583 aaKnown RBP15.34■□□□□ 0.05
VPS28-216ENST00000533806 ATG4CQ96DT6 458 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 GMCL1Q96IK5 515 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 PPP1R9AQ9ULJ8 1098 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 TAF6LQ9Y6J9 622 aa15.34■□□□□ 0.05
VPS28-216ENST00000533806 U3KPZ7 1027 aaPredicted RBP15.34■□□□□ 0.05
VPS28-216ENST00000533806 MAPK4P31152 587 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms