RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	VCAM1	P19320	739 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	GJA8	P48165	433 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	PDE1A	P54750	535 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	ICA1	Q05084	483 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	PDE4B	Q07343	736 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	PPP4R3B	Q5MIZ7	849 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	ZMYM1	Q5SVZ6	1142 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	IFNL3	Q8IZI9	196 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	MB21D1	Q8N884	522 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	GOPC	Q9HD26	462 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	HELLS	Q9NRZ9	838 aa		11.46	□□□□□ -0.57
CHD7-208	ENST00000528280	SALL3	Q9BXA9	1300 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280		A0A1W2PRG0	241 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	STRN	O43815	780 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	AKR1B1	P15121	316 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280		Q3C1V9	767 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	PLEKHH3	Q7Z736	793 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	SLC44A5	Q8NCS7	719 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	LRCH3	Q96II8	777 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	PAGR1	Q9BTK6	254 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	NAPB	Q9H115	298 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	VCPKMT	Q9H867	229 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	SYNPO2	Q9UMS6	1093 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	MYH7	P12883	1935 aa		11.45	□□□□□ -0.58
CHD7-208	ENST00000528280	MGAM	O43451	1857 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	LAMA3	Q16787	3333 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	CYP2D7	A0A087X1C5	515 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	WDR46	O15213	610 aa	Known RBP	11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	SGPL1	O95470	568 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	MYC	P01106	439 aa	Predicted RBP	11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	HMGCR	P04035	888 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	CHGB	P05060	677 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	EEF2	P13639	858 aa	Known RBP	11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	RGS2	P41220	211 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	MFAP1	P55081	439 aa	Known RBP	11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	ATP2B2	Q01814	1243 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	NUCB1	Q02818	461 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	MTFR1	Q15390	333 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	CHD1L	Q86WJ1	897 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	SIAH1	Q8IUQ4	282 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	TANGO6	Q9C0B7	1094 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	OSBPL3	Q9H4L5	887 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	TXNRD2	Q9NNW7	524 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	HMX1	Q9NP08	348 aa	Predicted RBP	11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	NYAP2	Q9P242	653 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	IVNS1ABP	Q9Y6Y0	642 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	NAV1	Q8NEY1	1877 aa		11.44	□□□□□ -0.58
CHD7-208	ENST00000528280	RPTOR	Q8N122	1335 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	SLC15A5	A6NIM6	579 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	TRIM6-TRIM34	B2RNG4	842 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280		M0R2C6	588 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	TFRC	P02786	760 aa	Known RBP	11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	INHA	P05111	366 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	ELN	P15502	786 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	DSG3	P32926	999 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	MCMDC2	Q4G0Z9	681 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	GPR153	Q6NV75	609 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	GPR142	Q7Z601	462 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	SHCBP1	Q8NEM2	672 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	EXOC6	Q8TAG9	804 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	LNPK	Q9C0E8	428 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	MROH8	Q9H579	483 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	SLC5A4	Q9NY91	659 aa		11.43	□□□□□ -0.58
CHD7-208	ENST00000528280	ZSWIM8	A7E2V4	1837 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	HIP1	O00291	1037 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	FLOT1	O75955	427 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	SLC25A27	O95847	323 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	CYP2B6	P20813	491 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	RASA1	P20936	1047 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	PTPRE	P23469	700 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	COPB2	P35606	906 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	EVX2	Q03828	476 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	MAP2K5	Q13163	448 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	ALX1	Q15699	326 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	MORN1	Q5T089	497 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	B4GALNT3	Q6L9W6	998 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	U2AF1L4	Q8WU68	220 aa	Known RBP	11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	USP6NL	Q92738	828 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	MKL1	Q969V6	931 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	HTATIP2	Q9BUP3	242 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	UNC93B1	Q9H1C4	597 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	STXBP5L	Q9Y2K9	1186 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	NR2E3	Q9Y5X4	410 aa		11.42	□□□□□ -0.58
CHD7-208	ENST00000528280	ROBO3	Q96MS0	1386 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	DDX60L	Q5H9U9	1706 aa	Known RBP	11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	CNMD	O75829	334 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	TTLL1	O95922	423 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	IGHD	P01880	384 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	TSPY3	P0CV98	308 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	TSPY8	P0CW00	308 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	ZKSCAN1	P17029	563 aa	Predicted RBP	11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	NT5C2	P49902	561 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	PPARA	Q07869	468 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	WDR78	Q5VTH9	848 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	MFSD14C	Q5VZR4	134 aa		11.41	□□□□□ -0.58
CHD7-208	ENST00000528280	UBE2Q1	Q7Z7E8	422 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms