RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RILPL1Q5EBL4 403 aa23.87■■□□□ 1.41
VPS28-209ENST00000528142 FMR1NBQ8N0W7 255 aaPredicted RBP23.87■■□□□ 1.41
VPS28-209ENST00000528142 IGKV6D-41A0A0C4DH26 115 aa23.86■■□□□ 1.41
VPS28-209ENST00000528142 TOP1P11387 765 aaKnown RBP23.86■■□□□ 1.41
VPS28-209ENST00000528142 SLC35G1Q2M3R5 365 aa23.86■■□□□ 1.41
VPS28-209ENST00000528142 ZFPM1Q8IX07 1006 aa23.86■■□□□ 1.41
VPS28-209ENST00000528142 CKAP2LQ8IYA6 745 aa23.86■■□□□ 1.41
VPS28-209ENST00000528142 NPM3O75607 178 aaKnown RBP23.85■■□□□ 1.41
VPS28-209ENST00000528142 CMA1P23946 247 aa23.85■■□□□ 1.41
VPS28-209ENST00000528142 MARCKSP29966 332 aaPredicted RBP23.85■■□□□ 1.41
VPS28-209ENST00000528142 KRT2P35908 639 aa23.85■■□□□ 1.41
VPS28-209ENST00000528142 CCDC173Q0VFZ6 552 aa23.85■■□□□ 1.41
VPS28-209ENST00000528142 EHD4Q9H223 541 aa23.85■■□□□ 1.41
VPS28-209ENST00000528142 SPON1Q9HCB6 807 aa23.85■■□□□ 1.41
VPS28-209ENST00000528142 AKR1B1P15121 316 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 VEGFAP15692 232 aaPredicted RBP23.84■■□□□ 1.41
VPS28-209ENST00000528142 SHMT1P34896 483 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 JMYQ8N9B5 988 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 ANP32BQ92688 251 aaKnown RBP23.84■■□□□ 1.41
VPS28-209ENST00000528142 TNFRSF25Q93038 417 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 FAM198AQ9UFP1 575 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 A0A1B0GVL5 298 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 CTAGE5O15320 804 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 HLA-DOAP06340 250 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 NDUFA8P51970 172 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 RBM5P52756 815 aaKnown RBP eCLIP23.84■■□□□ 1.41
VPS28-209ENST00000528142 UVSSAQ2YD98 709 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 DALRD3Q5D0E6 543 aaKnown RBP23.84■■□□□ 1.41
VPS28-209ENST00000528142 LZTS2Q9BRK4 669 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 MTMR4Q9NYA4 1195 aa23.84■■□□□ 1.41
VPS28-209ENST00000528142 CYTH3O43739 400 aa23.83■■□□□ 1.41
VPS28-209ENST00000528142 CACNB3P54284 484 aa23.83■■□□□ 1.41
VPS28-209ENST00000528142 TYRO3Q06418 890 aa23.83■■□□□ 1.41
VPS28-209ENST00000528142 CABP5Q9NP86 173 aa23.83■■□□□ 1.41
VPS28-209ENST00000528142 KINO60870 393 aaKnown RBP23.82■■□□□ 1.4
VPS28-209ENST00000528142 VPS33BQ9H267 617 aa23.82■■□□□ 1.4
VPS28-209ENST00000528142 DHX36Q9H2U1 1008 aaKnown RBP23.82■■□□□ 1.4
VPS28-209ENST00000528142 MRVI1Q9Y6F6 885 aa23.82■■□□□ 1.4
VPS28-209ENST00000528142 MYH6P13533 1939 aa23.82■■□□□ 1.4
VPS28-209ENST00000528142 EARS2Q5JPH6 523 aaKnown RBP23.82■■□□□ 1.4
VPS28-209ENST00000528142 SH3GLB2Q9NR46 395 aa23.82■■□□□ 1.4
VPS28-209ENST00000528142 ZNF277Q9NRM2 450 aaPredicted RBP23.82■■□□□ 1.4
VPS28-209ENST00000528142 FER1L6Q2WGJ9 1857 aa23.82■■□□□ 1.4
VPS28-209ENST00000528142 SH3BP5LQ7L8J4 393 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 LARGE2Q8N3Y3 721 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 PIBF1Q8WXW3 757 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 PDLIM2Q96JY6 352 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 BRMS1Q9HCU9 246 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 PCDHB6Q9Y5E3 794 aa23.81■■□□□ 1.4
VPS28-209ENST00000528142 FAM237AA0A1B0GTK4 181 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 FAM205CA6NFA0 338 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 DDTLA6NHG4 134 aaPredicted RBP23.8■■□□□ 1.4
VPS28-209ENST00000528142 KLRF2D3W0D1 207 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 CUTAO60888 179 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 VIL1P09327 827 aaKnown RBP23.8■■□□□ 1.4
VPS28-209ENST00000528142 CFAP100Q494V2 611 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 RSBN1LQ6PCB5 846 aaPredicted RBP23.8■■□□□ 1.4
VPS28-209ENST00000528142 SHC4Q6S5L8 630 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 RASGRP2Q7LDG7 609 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 SPZ1Q9BXG8 430 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 DNAJC18Q9H819 358 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 MTMR7Q9Y216 660 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 PARP1P09874 1014 aaKnown RBP23.8■■□□□ 1.4
VPS28-209ENST00000528142 GOLGA8HP0CJ92 632 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 PFKFB1P16118 471 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 SMARCA1P28370 1054 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 NLRP5P59047 1200 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 TCP10Q12799 353 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 SOGA3Q5TF21 947 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 GMLQ99445 158 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 HPSEQ9Y251 543 aa23.8■■□□□ 1.4
VPS28-209ENST00000528142 MORC2Q9Y6X9 1032 aaPredicted RBP23.8■■□□□ 1.4
VPS28-209ENST00000528142 USP17L2Q6R6M4 530 aa23.79■■□□□ 1.4
VPS28-209ENST00000528142 PRMT6Q96LA8 375 aaPredicted RBP23.79■■□□□ 1.4
VPS28-209ENST00000528142 TDRD3Q9H7E2 651 aaKnown RBP23.79■■□□□ 1.4
VPS28-209ENST00000528142 SLURP2P0DP57 97 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 RESP18Q5W5W9 173 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 SASS6Q6UVJ0 657 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 KRI1Q8N9T8 703 aaKnown RBP23.78■■□□□ 1.4
VPS28-209ENST00000528142 CCDC17Q96LX7 622 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 CLIC6Q96NY7 704 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 PI4KBQ9UBF8 816 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 BCS1LQ9Y276 419 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 SRCAPQ6ZRS2 3230 aa23.78■■□□□ 1.4
VPS28-209ENST00000528142 NFKBIEO00221 500 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 PSMD14O00487 310 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 RAD17O75943 681 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 ZNF202O95125 648 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 PTPREP23469 700 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 FHDC1Q9C0D6 1143 aaPredicted RBP23.77■■□□□ 1.4
VPS28-209ENST00000528142 FBXO2Q9UK22 296 aaPredicted RBP23.77■■□□□ 1.4
VPS28-209ENST00000528142 USP17L5A8MUK1 530 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 ADAMTS3O15072 1205 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 ENTPD3O75355 529 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 TTLL1O95922 423 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 SNHG28P0DPA3 235 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 PDHBP11177 359 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 CALML3P27482 149 aa23.77■■□□□ 1.4
VPS28-209ENST00000528142 NOM1Q5C9Z4 860 aaKnown RBP23.77■■□□□ 1.4
VPS28-209ENST00000528142 TYW1BQ6NUM6 668 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms