RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CEP95Q96GE4 821 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 TEPSINQ96N21 525 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 MTMR4Q9NYA4 1195 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 PPP2R3BQ9Y5P8 575 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 SIPA1L1O43166 1804 aa21.9■■□□□ 1.1
VPS28-207ENST00000526977 IGKV6D-41A0A0C4DH26 115 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 MPHOSPH10O00566 681 aaKnown RBP21.89■■□□□ 1.1
VPS28-207ENST00000526977 RXRAP19793 462 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 CDC27P30260 824 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 GUCY1B3Q02153 619 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 TROAPQ12815 778 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 MYL10Q9BUA6 226 aa21.89■■□□□ 1.1
VPS28-207ENST00000526977 FAM217BQ9NTX9 383 aaPredicted RBP21.89■■□□□ 1.1
VPS28-207ENST00000526977 CDKL5O76039 1030 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 SLURP2P0DP57 97 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 USP50Q70EL3 339 aaPredicted RBP21.89■■□□□ 1.09
VPS28-207ENST00000526977 NUP133Q8WUM0 1156 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 HOOK2Q96ED9 719 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 SPATA32Q96LK8 384 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 GGA3Q9NZ52 723 aa21.89■■□□□ 1.09
VPS28-207ENST00000526977 IQCA1LA6NCM1 817 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 ABCB5Q2M3G0 1257 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 TMEM179Q6ZVK1 233 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 PNMA1Q8ND90 353 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 MAP3K14Q99558 947 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 TMEM47Q9BQJ4 181 aa21.88■■□□□ 1.09
VPS28-207ENST00000526977 TTLL1O95922 423 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 TOP1P11387 765 aaKnown RBP21.87■■□□□ 1.09
VPS28-207ENST00000526977 RTN1Q16799 776 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 C8orf76Q96K31 380 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 RBSNQ9H1K0 784 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 KANSL2Q9H9L4 492 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 CABP5Q9NP86 173 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 NTRK3Q16288 839 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 CCDC183Q5T5S1 534 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 OTUD7BQ6GQQ9 843 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 CDAN1Q8IWY9 1227 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 CCDC144CPQ8IYA2 1237 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 FBXO18Q8NFZ0 1043 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 RBM28Q9NW13 759 aaKnown RBP21.87■■□□□ 1.09
VPS28-207ENST00000526977 CFAP45Q9UL16 551 aa21.87■■□□□ 1.09
VPS28-207ENST00000526977 SCAF8Q9UPN6 1271 aaKnown RBP21.87■■□□□ 1.09
VPS28-207ENST00000526977 MYH8P13535 1937 aa21.86■■□□□ 1.09
VPS28-207ENST00000526977 EPHX2P34913 555 aa21.86■■□□□ 1.09
VPS28-207ENST00000526977 MIGA2Q7L4E1 593 aa21.86■■□□□ 1.09
VPS28-207ENST00000526977 ZC3H15Q8WU90 426 aaKnown RBP21.86■■□□□ 1.09
VPS28-207ENST00000526977 CTCFLQ8NI51 663 aaPredicted RBP21.85■■□□□ 1.09
VPS28-207ENST00000526977 DCPSQ96C86 337 aaKnown RBP21.85■■□□□ 1.09
VPS28-207ENST00000526977 KIF5BP33176 963 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 DCAF15Q66K64 600 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 GJB4Q9NTQ9 266 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 NYAP2Q9P242 653 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 CLIP2Q9UDT6 1046 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 GDF11O95390 407 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 IFNAR1P17181 557 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 NBPF12Q5TAG4 269 aaPredicted RBP21.84■■□□□ 1.09
VPS28-207ENST00000526977 ATL3Q6DD88 541 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 RGS22Q8NE09 1264 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 PHKBQ93100 1093 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 RCOR1Q9UKL0 485 aa21.84■■□□□ 1.09
VPS28-207ENST00000526977 LETM1O95202 739 aaPredicted RBP21.83■■□□□ 1.09
VPS28-207ENST00000526977 GH2P01242 217 aa21.83■■□□□ 1.09
VPS28-207ENST00000526977 NASPP49321 788 aaPredicted RBP21.83■■□□□ 1.09
VPS28-207ENST00000526977 SUPT20HL1Q3ZLR7 823 aa21.83■■□□□ 1.09
VPS28-207ENST00000526977 PNMA8AQ86V59 439 aaPredicted RBP21.83■■□□□ 1.09
VPS28-207ENST00000526977 MKL1Q969V6 931 aa21.83■■□□□ 1.09
VPS28-207ENST00000526977 PGBD1Q96JS3 809 aa21.83■■□□□ 1.09
VPS28-207ENST00000526977 CAP2P40123 477 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 SULF1Q8IWU6 871 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 ZNF396Q96N95 335 aaPredicted RBP21.82■■□□□ 1.08
VPS28-207ENST00000526977 TAF1DQ9H5J8 278 aaPredicted RBP21.82■■□□□ 1.08
VPS28-207ENST00000526977 RRP1BQ14684 758 aaKnown RBP21.82■■□□□ 1.08
VPS28-207ENST00000526977 SEPT2Q15019 361 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 AIFM3Q96NN9 605 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 ALG1Q9BT22 464 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 GINM1Q9NU53 330 aa21.82■■□□□ 1.08
VPS28-207ENST00000526977 GREB1LQ9C091 1923 aaPredicted RBP21.81■■□□□ 1.08
VPS28-207ENST00000526977 GOLGA6L4A6NEF3 574 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 PHF20L1A8MW92 1017 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 LIG1P18858 919 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 GUCY1A2P33402 732 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 GNAQP50148 359 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 CEBPZQ03701 1054 aaKnown RBP21.81■■□□□ 1.08
VPS28-207ENST00000526977 ICA1Q05084 483 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 USP28Q96RU2 1077 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 SCN4AP35499 1836 aa21.81■■□□□ 1.08
VPS28-207ENST00000526977 POTECB2RU33 542 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 EEF2P13639 858 aaKnown RBP21.8■■□□□ 1.08
VPS28-207ENST00000526977 SSRP1Q08945 709 aaKnown RBP21.8■■□□□ 1.08
VPS28-207ENST00000526977 GRM4Q14833 912 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 TRIM22Q8IYM9 498 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 FTOQ9C0B1 505 aaKnown RBP eCLIP21.8■■□□□ 1.081e-6■■□□□ 11.8
VPS28-207ENST00000526977 TSPY26PQ9H489 355 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 SYNPO2Q9UMS6 1093 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 ASNSP08243 561 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 ZNF341Q9BYN7 854 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 ZBTB21Q9ULJ3 1066 aa21.8■■□□□ 1.08
VPS28-207ENST00000526977 STK36Q9NRP7 1315 aa21.79■■□□□ 1.08
VPS28-207ENST00000526977 CTNND1O60716 968 aaKnown RBP21.79■■□□□ 1.08
VPS28-207ENST00000526977 FMNL1O95466 1100 aaPredicted RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms