RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	GAB4	Q2WGN9	574 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	RALGPS1	Q5JS13	557 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	TTC6	Q86TZ1	520 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	TSPYL5	Q86VY4	417 aa	Predicted RBP	4.08	□□□□□ -1.76
CD44-216	ENST00000525293	POU5F2	Q8N7G0	328 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	NKD1	Q969G9	470 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	VWCE	Q96DN2	955 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	CCDC120	Q96HB5	630 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	KIRREL1	Q96J84	757 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	EAF1	Q96JC9	268 aa	Predicted RBP	4.08	□□□□□ -1.76
CD44-216	ENST00000525293	SPON2	Q9BUD6	331 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	NT5C1A	Q9BXI3	368 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	ADAMTS10	Q9H324	1103 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	EHMT1	Q9H9B1	1298 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	GMIP	Q9P107	970 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	DUSP13	Q9UII6	198 aa		4.08	□□□□□ -1.76
CD44-216	ENST00000525293	RBM47	A0AV96	593 aa	Known RBP	4.07	□□□□□ -1.76
CD44-216	ENST00000525293	SHISA3	A0PJX4	238 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	UBOX5	O94941	541 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	POLR2B	P30876	1174 aa	Known RBP	4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF165	P49910	485 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	HK2	P52789	917 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	FANCC	Q00597	558 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	EGR3	Q06889	387 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF394	Q53GI3	561 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF648	Q5T619	568 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-216	ENST00000525293	OVOS1	Q6IE37	1185 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	USP48	Q86UV5	1035 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	KIAA0825	Q8IV33	1275 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	SLITRK4	Q8IW52	837 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	REXO1	Q8N1G1	1221 aa	Known RBP	4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ATG4C	Q96DT6	458 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	LIN37	Q96GY3	246 aa	Predicted RBP	4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ASPN	Q9BXN1	380 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	KRTAP4-2	Q9BYR5	136 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	TMEM59L	Q9UK28	342 aa		4.07	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF503-AS2	A6NEH8	195 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	LRRC10B	A6NIK2	292 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	C8A	P07357	584 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	LTK	P29376	864 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	ERVFC1	P60507	584 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	TRIM26	Q12899	539 aa	Predicted RBP	4.06	□□□□□ -1.76
CD44-216	ENST00000525293	MLANA	Q16655	118 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	CLEC16A	Q2KHT3	1053 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	TMEM67	Q5HYA8	995 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	CDCP2	Q5VXM1	449 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	RNF34	Q969K3	372 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
CD44-216	ENST00000525293	ANTXR1	Q9H6X2	564 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	CNNM2	Q9H8M5	875 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
CD44-216	ENST00000525293	PCDHGB7	Q9Y5F8	929 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	PCDHA11	Q9Y5I1	949 aa		4.06	□□□□□ -1.76
CD44-216	ENST00000525293	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	FARP2	O94887	1054 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	GLI1	P08151	1106 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	RAC2	P15153	192 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	FZD5	Q13467	585 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	NBPF9	Q3BBW0	867 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	NBPF12	Q5TAG4	269 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	MPZL3	Q6UWV2	235 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	NLRC3	Q7RTR2	1065 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	MYLIP	Q8WY64	445 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	ASCC2	Q9H1I8	757 aa	Predicted RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	METTL5	Q9NRN9	209 aa	Known RBP	4.05	□□□□□ -1.76
CD44-216	ENST00000525293	FAM53C	Q9NYF3	392 aa		4.05	□□□□□ -1.76
CD44-216	ENST00000525293	CLEC3A	O75596	197 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	RECK	O95980	971 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	NME1	P15531	152 aa	Known RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	TRHR	P34981	398 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	RACK1	P63244	317 aa	Known RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	RNF4	P78317	190 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	RAD51AP2	Q09MP3	1159 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	NMI	Q13287	307 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	SNW1	Q13573	536 aa	Known RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	ZNF124	Q15973	351 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	PRR23B	Q6ZRT6	265 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	TMC3	Q7Z5M5	1100 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	ABHD4	Q8TB40	342 aa		4.04	□□□□□ -1.76
CD44-216	ENST00000525293	SYTL4	Q96C24	671 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-216	ENST00000525293	FAM86C2P	A6NEL3	165 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	SCAMP3	O14828	347 aa	Known RBP	4.03	□□□□□ -1.76
CD44-216	ENST00000525293	HPX	P02790	462 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	ZGLP1	P0C6A0	271 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	CCNF	P41002	786 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	TEK	Q02763	1124 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	MESP2	Q0VG99	397 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	KSR1	Q8IVT5	923 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	TMEM192	Q8IY95	271 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	USHBP1	Q8N6Y0	703 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	PDZD8	Q8NEN9	1154 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	ENOX1	Q8TC92	643 aa	Known RBP	4.03	□□□□□ -1.76
CD44-216	ENST00000525293	DHX38	Q92620	1227 aa	Known RBP	4.03	□□□□□ -1.76
CD44-216	ENST00000525293	TCTN2	Q96GX1	697 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	FAM84A	Q96KN4	292 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	FERD3L	Q96RJ6	166 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	DIRC2	Q96SL1	478 aa		4.03	□□□□□ -1.76
CD44-216	ENST00000525293	SLC9A7	Q96T83	725 aa		4.03	□□□□□ -1.76

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