RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 RAD21O60216 631 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 TSPY3P0CV98 308 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 TSPY8P0CW00 308 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 IRX6P78412 446 aaPredicted RBP19.37■□□□□ 0.69
LSM1-205ENST00000523511 PPARAQ07869 468 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 EPB41L4AQ9HCS5 686 aaPredicted RBP19.37■□□□□ 0.69
LSM1-205ENST00000523511 NYAP2Q9P242 653 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 RASA1P20936 1047 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 ALX1Q15699 326 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 PLEKHH3Q7Z736 793 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 DIAPH3Q9NSV4 1193 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 SYNPO2Q9UMS6 1093 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 IVNS1ABPQ9Y6Y0 642 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 NAV1Q8NEY1 1877 aa19.36■□□□□ 0.69
LSM1-205ENST00000523511 FLOT1O75955 427 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 MYCP01106 439 aaPredicted RBP19.35■□□□□ 0.69
LSM1-205ENST00000523511 SDSP20132 328 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 Q3C1V9 767 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 SIAH1Q8IUQ4 282 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 RNF208Q9H0X6 261 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 TXNRD2Q9NNW7 524 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 CLIP2Q9UDT6 1046 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 ATAD5Q96QE3 1844 aa19.35■□□□□ 0.69
LSM1-205ENST00000523511 XRCC5P13010 732 aaKnown RBP19.34■□□□□ 0.69
LSM1-205ENST00000523511 WDR78Q5VTH9 848 aa19.34■□□□□ 0.69
LSM1-205ENST00000523511 CCDC129Q6ZRS4 1044 aa19.34■□□□□ 0.69
LSM1-205ENST00000523511 SPICE1Q8N0Z3 855 aa19.34■□□□□ 0.69
LSM1-205ENST00000523511 LOC285556D6RIA3 1793 aa19.34■□□□□ 0.69
LSM1-205ENST00000523511 POTEFA5A3E0 1075 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 SPDYE16A6NNV3 312 aaPredicted RBP19.33■□□□□ 0.68
LSM1-205ENST00000523511 SMIM22K7EJ46 135 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 PRDM1O75626 825 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 TTLL1O95922 423 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 CCL5P13501 91 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 DSG3P32926 999 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 RGS2P41220 211 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 TFAP4Q01664 338 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 NMIQ13287 307 aaPredicted RBP19.33■□□□□ 0.68
LSM1-205ENST00000523511 GPR142Q7Z601 462 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 NEDD1Q8NHV4 660 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 FAM227BQ96M60 508 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 ANAPC4Q9UJX5 808 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 GJD2Q9UKL4 321 aa19.33■□□□□ 0.68
LSM1-205ENST00000523511 DDX60LQ5H9U9 1706 aaKnown RBP19.33■□□□□ 0.68
LSM1-205ENST00000523511 TSPY2A6NKD2 308 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 F5H6K3 240 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 STRNO43815 780 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 GJB1P08034 283 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 EN2P19622 333 aaPredicted RBP19.32■□□□□ 0.68
LSM1-205ENST00000523511 KLRC3Q07444 240 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 MKL1Q969V6 931 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 SLC5A4Q9NY91 659 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 MTMR4Q9NYA4 1195 aa19.32■□□□□ 0.68
LSM1-205ENST00000523511 CTDP1Q9Y5B0 961 aaPredicted RBP19.32■□□□□ 0.68
LSM1-205ENST00000523511 CCDC171Q6TFL3 1326 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 FGAP02671 866 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 HMGCRP04035 888 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 INHAP05111 366 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 HSPD1P10809 573 aaKnown RBP19.31■□□□□ 0.68
LSM1-205ENST00000523511 PCP11498 1178 aaKnown RBP19.31■□□□□ 0.68
LSM1-205ENST00000523511 ELNP15502 786 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 CYP2B6P20813 491 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 NT5C2P49902 561 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.31■□□□□ 0.68
LSM1-205ENST00000523511 MROH8Q9H579 483 aa19.31■□□□□ 0.68
LSM1-205ENST00000523511 PTPRFP10586 1907 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 MYH7P12883 1935 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 A0A0D9SFI3 127 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 SLC15A5A6NIM6 579 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 SLC25A27O95847 323 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 COPB2P35606 906 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 PLS1Q14651 629 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 MTFR1Q15390 333 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 SAMD1Q6SPF0 538 aaPredicted RBP19.3■□□□□ 0.68
LSM1-205ENST00000523511 CWC27Q6UX04 472 aaKnown RBP19.3■□□□□ 0.68
LSM1-205ENST00000523511 CLEC10AQ8IUN9 316 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 SHCBP1Q8NEM2 672 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 CEP95Q96GE4 821 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 SPATC1LQ9H0A9 340 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 PORCNQ9H237 461 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 RNF41Q9H4P4 317 aaPredicted RBP19.3■□□□□ 0.68
LSM1-205ENST00000523511 TOMM22Q9NS69 142 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 BTBD7Q9P203 1132 aa19.3■□□□□ 0.68
LSM1-205ENST00000523511 ZMYM6O95789 1325 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 IGKV6D-41A0A0C4DH26 115 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 ZNF213O14771 459 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 RANBP6O60518 1105 aaKnown RBP19.29■□□□□ 0.68
LSM1-205ENST00000523511 CNMDO75829 334 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 ZKSCAN1P17029 563 aaPredicted RBP19.29■□□□□ 0.68
LSM1-205ENST00000523511 GJA8P48165 433 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 VPS53Q5VIR6 699 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 PRPF38AQ8NAV1 312 aaKnown RBP19.29■□□□□ 0.68
LSM1-205ENST00000523511 RUFY2Q8WXA3 655 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 HMX1Q9NP08 348 aaPredicted RBP19.29■□□□□ 0.68
LSM1-205ENST00000523511 CTNNA3Q9UI47 895 aa19.29■□□□□ 0.68
LSM1-205ENST00000523511 TFRCP02786 760 aaKnown RBP19.28■□□□□ 0.68
LSM1-205ENST00000523511 PTPREP23469 700 aa19.28■□□□□ 0.68
LSM1-205ENST00000523511 CTDSPL2Q05D32 466 aa19.28■□□□□ 0.68
LSM1-205ENST00000523511 MAP2K5Q13163 448 aa19.28■□□□□ 0.68
LSM1-205ENST00000523511 FAM47AQ5JRC9 791 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms