RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 ZNF589Q86UQ0 364 aaPredicted RBP13.72□□□□□ -0.21
VCAN-212ENST00000515397 COA7Q96BR5 231 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 NACAP1Q9BZK3 213 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 TANGO6Q9C0B7 1094 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 ARHGEF10LQ9HCE6 1279 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 BTBD7Q9P203 1132 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 MORF4L1Q9UBU8 362 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 TMX2Q9Y320 296 aa13.72□□□□□ -0.21
VCAN-212ENST00000515397 LOC285556D6RIA3 1793 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 SDSP20132 328 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 PRMT2P55345 433 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 ERVK-9P63128 1117 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 ERVK-24P63145 666 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 PPARAQ07869 468 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 MCMDC2Q4G0Z9 681 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 ZNF444Q8N0Y2 327 aaPredicted RBP13.71□□□□□ -0.21
VCAN-212ENST00000515397 NUP88Q99567 741 aaPredicted RBP13.71□□□□□ -0.21
VCAN-212ENST00000515397 TMEM106CQ9BVX2 250 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 KANSL2Q9H9L4 492 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 CLIP2Q9UDT6 1046 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 GJD2Q9UKL4 321 aa13.71□□□□□ -0.21
VCAN-212ENST00000515397 SPDYE16A6NNV3 312 aaPredicted RBP13.7□□□□□ -0.22
VCAN-212ENST00000515397 CYP2B6P20813 491 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 TRIM32Q13049 653 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 CCAR1Q8IX12 1150 aaKnown RBP13.7□□□□□ -0.22
VCAN-212ENST00000515397 OSBPL3Q9H4L5 887 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 VCPKMTQ9H867 229 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 HELLSQ9NRZ9 838 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 FBXO28Q9NVF7 368 aa13.7□□□□□ -0.22
VCAN-212ENST00000515397 FLOT1O75955 427 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 FGAP02671 866 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 CCL5P13501 91 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 HAND2P61296 217 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 TFAP4Q01664 338 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 COG2Q14746 738 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 FAM83BQ5T0W9 1011 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 CWC27Q6UX04 472 aaKnown RBP13.69□□□□□ -0.22
VCAN-212ENST00000515397 SKAP1Q86WV1 359 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 ATG4CQ96DT6 458 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 CEP95Q96GE4 821 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 UNC93B1Q9H1C4 597 aa13.69□□□□□ -0.22
VCAN-212ENST00000515397 INHAP05111 366 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 HSPD1P10809 573 aaKnown RBP13.68□□□□□ -0.22
VCAN-212ENST00000515397 DSG3P32926 999 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 PLS1Q14651 629 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 GPR142Q7Z601 462 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 NKX2-3Q8TAU0 364 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 RNF208Q9H0X6 261 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 CWC22Q9HCG8 908 aaKnown RBP13.68□□□□□ -0.22
VCAN-212ENST00000515397 HOXC10Q9NYD6 342 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 RABGAP1Q9Y3P9 1069 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 BRCA2P51587 3418 aa13.68□□□□□ -0.22
VCAN-212ENST00000515397 PDE4DIPQ5VU43 2346 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 IGKV6D-41A0A0C4DH26 115 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 NMT2O60551 498 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 TSPY3P0CV98 308 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 TSPY8P0CW00 308 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 GSPT1P15170 499 aaKnown RBP13.67□□□□□ -0.22
VCAN-212ENST00000515397 PDE4BQ07343 736 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 CCL14Q16627 93 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 RRP12Q5JTH9 1297 aaKnown RBP13.67□□□□□ -0.22
VCAN-212ENST00000515397 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 LRRC47Q8N1G4 583 aaKnown RBP13.67□□□□□ -0.22
VCAN-212ENST00000515397 SLAIN1Q8ND83 568 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 SH2D4AQ9H788 454 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 TOMM22Q9NS69 142 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 DIAPH3Q9NSV4 1193 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 ROBO3Q96MS0 1386 aa13.67□□□□□ -0.22
VCAN-212ENST00000515397 MGAMO43451 1857 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 F5H6K3 240 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 RANBP6O60518 1105 aaKnown RBP13.66□□□□□ -0.22
VCAN-212ENST00000515397 NDUFB10O96000 172 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 SLC3A2P08195 630 aaKnown RBP13.66□□□□□ -0.22
VCAN-212ENST00000515397 MAPK4P31152 587 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 UBXN2AP68543 259 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 KLRC3Q07444 240 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 IRF5Q13568 498 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 LBX2Q6XYB7 198 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 NEDD1Q8NHV4 660 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 LPAR1Q92633 364 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 NUDT12Q9BQG2 462 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 MOV10L1Q9BXT6 1211 aaKnown RBP13.66□□□□□ -0.22
VCAN-212ENST00000515397 IL25Q9H293 177 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 GOPCQ9HD26 462 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 MTMR4Q9NYA4 1195 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 NYAP2Q9P242 653 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 MTMR7Q9Y216 660 aa13.66□□□□□ -0.22
VCAN-212ENST00000515397 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.66□□□□□ -0.22
VCAN-212ENST00000515397 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 SLC4A3P48751 1232 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 ALX1Q15699 326 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 TTC22Q5TAA0 569 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 PXYLP1Q8TE99 480 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 GTF3C2Q8WUA4 911 aaPredicted RBP13.65□□□□□ -0.22
VCAN-212ENST00000515397 TRIB2Q92519 343 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 ZNF287Q9HBT7 754 aa13.65□□□□□ -0.22
VCAN-212ENST00000515397 ISY1Q9ULR0 285 aaKnown RBP13.65□□□□□ -0.22
VCAN-212ENST00000515397 TNRC18O15417 2968 aaPredicted RBP13.65□□□□□ -0.22
VCAN-212ENST00000515397 TSPY2A6NKD2 308 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms