RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 CEP290O15078 2479 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 PTPREP23469 700 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 COG2Q14746 738 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 LBX2Q6XYB7 198 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 TRPV1Q8NER1 839 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 SEC62Q99442 399 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 OGDHLQ9ULD0 1010 aa13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 COL11A1P12107 1806 aaPredicted RBP13.47□□□□□ -0.25
LIMCH1-214ENST00000512228 M0R2C6 588 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 EEF2P13639 858 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 MAP2K5Q13163 448 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 TMEM179Q6ZVK1 233 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 C16orf86Q6ZW13 317 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 MOV10L1Q9BXT6 1211 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 FBXO28Q9NVF7 368 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 TMX2Q9Y320 296 aa13.46□□□□□ -0.25
LIMCH1-214ENST00000512228 RNF113AO15541 343 aaKnown RBP13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 COBLO75128 1261 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 DSG3P32926 999 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 RGS2P41220 211 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 WDR78Q5VTH9 848 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 KBTBD3Q8NAB2 608 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 PI4K2BQ8TCG2 481 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 SOCS4Q8WXH5 440 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 ATG4CQ96DT6 458 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 HTATIP2Q9BUP3 242 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 EPB41L4AQ9HCS5 686 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 STAP2Q9UGK3 403 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 SWAP70Q9UH65 585 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 SMCHD1A6NHR9 2005 aa13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 GREB1LQ9C091 1923 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-214ENST00000512228 PFASO15067 1338 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 TRIOBPQ9H2D6 2365 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 SLC15A5A6NIM6 579 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 EVI5O60447 810 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 CYP2C19P33261 490 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 GRB14Q14449 540 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 NECAB2Q7Z6G3 386 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 CCAR1Q8IX12 1150 aaKnown RBP13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 GTF3C2Q8WUA4 911 aaPredicted RBP13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 TANGO6Q9C0B7 1094 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 VCPKMTQ9H867 229 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 HOXC10Q9NYD6 342 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 ADAMTS5Q9UNA0 930 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 A0A0G2JMZ2 1700 aa13.44□□□□□ -0.26
LIMCH1-214ENST00000512228 FRMPD3Q5JV73 1810 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 COL6A1P12109 1028 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 ZKSCAN1P17029 563 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 ERCC3P19447 782 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 RASA1P20936 1047 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 ICA1Q05084 483 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 TMEM132BQ14DG7 1078 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 SBK1Q52WX2 424 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 PRAMEF19Q5SWL8 479 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 SAMD1Q6SPF0 538 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 CCDC17Q96LX7 622 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 CRBNQ96SW2 442 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 NUP88Q99567 741 aaPredicted RBP13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 APBA2Q99767 749 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 SPATC1LQ9H0A9 340 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 INCENPQ9NQS7 918 aa13.43□□□□□ -0.26
LIMCH1-214ENST00000512228 SOX1O00570 391 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 FOXP2O15409 715 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 FLOT1O75955 427 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 HOXC6P09630 235 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 SYN1P17600 705 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 CCNA1P78396 465 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 ATP2B2Q01814 1243 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 C7orf61Q8IZ16 206 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 ANKLE1Q8NAG6 615 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 APPBP2Q92624 585 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 NBPF3Q9H094 633 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 ZMYND8Q9ULU4 1186 aaPredicted RBP13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 TACC3Q9Y6A5 838 aa13.42□□□□□ -0.26
LIMCH1-214ENST00000512228 SALL3Q9BXA9 1300 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 GPAA1O43292 621 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 PRDM1O75626 825 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 ADORA2AP29274 412 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 RRP1P56182 461 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 PLS1Q14651 629 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 ANO1Q5XXA6 986 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 ZSCAN25Q6NSZ9 544 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 REPS2Q8NFH8 660 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 C11orf49Q9H6J7 331 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 KANSL2Q9H9L4 492 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 ARHGEF10LQ9HCE6 1279 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 NR2E3Q9Y5X4 410 aa13.41□□□□□ -0.26
LIMCH1-214ENST00000512228 IGKV6D-41A0A0C4DH26 115 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 LRRC26Q2I0M4 334 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 FAM83BQ5T0W9 1011 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 CCDC129Q6ZRS4 1044 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 NCAPG2Q86XI2 1143 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 TRMT44Q8IYL2 757 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 IFNL3Q8IZI9 196 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 LPAR1Q92633 364 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 MYH4Q9Y623 1939 aa13.4□□□□□ -0.26
LIMCH1-214ENST00000512228 PATL2C9JE40 543 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 VWA5AO00534 786 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms