RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ARHGAP42A6NI28 874 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 PPIP5K2O43314 1243 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TRPA1O75762 1119 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TTC4O95801 387 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 APBA3O96018 575 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 APOEP02649 317 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CHMP4BP1P59074 171 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ST5P78524 1137 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.95□□□□□ -1.78
USP53-205ENST00000509769 ASPHQ12797 758 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 MRPL28Q13084 256 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 SF3B3Q15393 1217 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 CCDC93Q567U6 631 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 MUM1L1Q5H9M0 696 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ALS2CLQ60I27 953 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TMC6Q7Z403 805 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KIAA2013Q8IYS2 634 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KIRREL3Q8IZU9 778 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TBC1D5Q92609 795 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ABTB1Q969K4 478 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 CNPY3Q9BT09 278 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.95□□□□□ -1.78
USP53-205ENST00000509769 MPP6Q9NZW5 540 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 IPO5O00410 1097 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 CAPN9O14815 690 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KDM4AO75164 1064 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 MAN1A1P33908 653 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KRT72Q14CN4 511 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.95□□□□□ -1.78
USP53-205ENST00000509769 VPS53Q5VIR6 699 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 C16orf87Q6PH81 154 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 DEFB132Q7Z7B7 95 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 PNMA8AQ86V59 439 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 SYCE1Q8N0S2 351 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 KLHL23Q8NBE8 558 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.95□□□□□ -1.78
USP53-205ENST00000509769 NEK11Q8NG66 645 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 RBM46Q8TBY0 533 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 KCNG4Q8TDN1 519 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 SLC16A10Q8TF71 515 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 DDI1Q8WTU0 396 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 INTS4Q96HW7 963 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.95□□□□□ -1.78
USP53-205ENST00000509769 STRN4Q9NRL3 753 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 GID8Q9NWU2 228 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 POGKQ9P215 609 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CTDP1Q9Y5B0 961 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 ORC6Q9Y5N6 252 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 DHX57Q6P158 1386 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 CCDC169A6NNP5 214 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 VGLL3A8MV65 326 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 LSM1O15116 133 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 ARHGAP6O43182 974 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TSPAN9O75954 239 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 SMARCA1P28370 1054 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ELF1P32519 619 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ATP6V1E1P36543 226 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 HSPA13P48723 471 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 EIF3BP55884 814 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 RASSF7Q02833 373 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 BLOC1S2Q6QNY1 142 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ANO5Q75V66 913 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ZNF513Q8N8E2 541 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 SECISBP2LQ93073 1101 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 KLRG1Q96E93 195 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TRIM8Q9BZR9 551 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CAAP1Q9H8G2 361 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 METTL14Q9HCE5 456 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 KRT82Q9NSB4 513 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 IPPQ9Y573 584 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8CPA6NN73 597 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 EFCAB14O75071 495 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ZNF189O75820 626 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 SERPINB2P05120 415 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 PYGMP11217 842 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CDC25BP30305 580 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 GNL1P36915 607 aaPredicted RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 SERPINB4P48594 390 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ADKP55263 362 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 CCDC15Q0P6D6 951 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 RASGRF1Q13972 1273 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 HABP4Q5JVS0 413 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 RFWD2Q8NHY2 731 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CEP19Q96LK0 163 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 MTFR1LQ9H019 292 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 UNC45AQ9H3U1 944 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TUBB1Q9H4B7 451 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 SPC25Q9HBM1 224 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 CD209Q9NNX6 404 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TYW1Q9NV66 732 aaKnown RBP3.95□□□□□ -1.78
USP53-205ENST00000509769 HAUS2Q9NVX0 235 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 HMG20BQ9P0W2 317 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 FAM8A1Q9UBU6 413 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TBC1D2BQ9UPU7 963 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TRAK1Q9UPV9 953 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 ZNF711Q9Y462 761 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 STK24Q9Y6E0 443 aa3.95□□□□□ -1.78
USP53-205ENST00000509769 TTC41PQ6P2S7 1318 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 FAM170AA1A519 330 aa3.94□□□□□ -1.78
USP53-205ENST00000509769 RAB11FIP3O75154 756 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms