RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 LRRC7Q96NW7 1537 aa6.65□□□□□ -1.35
NUP54-206ENST00000508465 IGF2BP3O00425 579 aaKnown RBP eCLIP6.64□□□□□ -1.35
NUP54-206ENST00000508465 EIF1AYO14602 144 aaKnown RBP6.64□□□□□ -1.35
NUP54-206ENST00000508465 ERVK-24P63145 666 aa6.64□□□□□ -1.35
NUP54-206ENST00000508465 FAM129BQ96TA1 746 aa6.64□□□□□ -1.35
NUP54-206ENST00000508465 PRDM7Q9NQW5 492 aa6.64□□□□□ -1.35
NUP54-206ENST00000508465 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.64□□□□□ -1.35
NUP54-206ENST00000508465 TMEM94Q12767 1356 aa6.64□□□□□ -1.35
NUP54-206ENST00000508465 ZNF503-AS2A6NEH8 195 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 METP08581 1390 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 XRCC5P13010 732 aaKnown RBP6.63□□□□□ -1.35
NUP54-206ENST00000508465 CPS1P31327 1500 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 GRM2Q14416 872 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 ZC3H12AQ5D1E8 599 aaKnown RBP6.63□□□□□ -1.35
NUP54-206ENST00000508465 ADGRF5Q8IZF2 1346 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 HEXIM2Q96MH2 286 aaKnown RBP6.63□□□□□ -1.35
NUP54-206ENST00000508465 EMILIN2Q9BXX0 1053 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 NIF3L1Q9GZT8 377 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 STK26Q9P289 416 aa6.63□□□□□ -1.35
NUP54-206ENST00000508465 CLTCL1P53675 1640 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 IQSEC2Q5JU85 1478 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 ADAMTS13Q76LX8 1427 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 NEFMP07197 916 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 ARNTP27540 789 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 FCGRTP55899 365 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 TMEM132EQ6IEE7 984 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 MPZL3Q6UWV2 235 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 PDZD3Q86UT5 571 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 SULF2Q8IWU5 870 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 NLRP2Q9NX02 1062 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 CTNND2Q9UQB3 1225 aa6.62□□□□□ -1.35
NUP54-206ENST00000508465 KDM5AP29375 1690 aaKnown RBP6.61□□□□□ -1.35
NUP54-206ENST00000508465 PTPRUQ92729 1446 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 RPGRIP1LQ68CZ1 1315 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 GNAT3A8MTJ3 354 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 TSPAN15O95858 294 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 CFPP27918 469 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 MAP1SQ66K74 1059 aaPredicted RBP6.61□□□□□ -1.35
NUP54-206ENST00000508465 SIAH1Q8IUQ4 282 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 ACSBG1Q96GR2 724 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 LIN37Q96GY3 246 aaPredicted RBP6.61□□□□□ -1.35
NUP54-206ENST00000508465 PRDM10Q9NQV6 1147 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 PICK1Q9NRD5 415 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 LMCD1Q9NZU5 365 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 GTF3C3Q9Y5Q9 886 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 SPHKAPQ2M3C7 1700 aa6.61□□□□□ -1.35
NUP54-206ENST00000508465 CARNS1A5YM72 827 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 GLI1P08151 1106 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 ATF3P18847 181 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 CLCN7P51798 805 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 ARHGAP4P98171 946 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 ECM1Q16610 540 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 SYDE1Q6ZW31 735 aaPredicted RBP6.6□□□□□ -1.35
NUP54-206ENST00000508465 FAM214BQ7L5A3 538 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 SPACA3Q8IXA5 215 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 CCDC82Q8N4S0 544 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 EPS8L3Q8TE67 593 aaKnown RBP6.6□□□□□ -1.35
NUP54-206ENST00000508465 CSRNP1Q96S65 589 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 C19orf44Q9H6X5 657 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 TRPM2O94759 1503 aa6.6□□□□□ -1.35
NUP54-206ENST00000508465 CCDC144AA2RUR9 1427 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 DISP3Q9P2K9 1392 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 ALKQ9UM73 1620 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 NME2P22392 152 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 TMEM67Q5HYA8 995 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 CDC37L1Q7L3B6 337 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 CYFIP1Q7L576 1253 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 WAPLQ7Z5K2 1190 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 LRRC56Q8IYG6 542 aaPredicted RBP6.59□□□□□ -1.35
NUP54-206ENST00000508465 DMRTB1Q96MA1 342 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 CBX8Q9HC52 389 aa6.59□□□□□ -1.35
NUP54-206ENST00000508465 MSH6P52701 1360 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 ANKRD30BQ9BXX2 1392 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 NFIBO00712 420 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 ZNF865P0CJ78 1059 aaPredicted RBP6.58□□□□□ -1.36
NUP54-206ENST00000508465 SERPINB4P48594 390 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 NKPD1Q17RQ9 610 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 CILP2Q8IUL8 1156 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 KCT2Q8NC54 265 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 GPBAR1Q8TDU6 330 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 KIRREL1Q96J84 757 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 AKAP2Q9Y2D5 859 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 SAMM50Q9Y512 469 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 NEXMIFQ5QGS0 1516 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 SPATA31E1Q6ZUB1 1445 aa6.58□□□□□ -1.36
NUP54-206ENST00000508465 CHD2O14647 1828 aaKnown RBP6.57□□□□□ -1.36
NUP54-206ENST00000508465 KIF1BO60333 1816 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 XIRP1Q702N8 1843 aaKnown RBP6.57□□□□□ -1.36
NUP54-206ENST00000508465 FYB2Q5VWT5 728 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 LILRA6Q6PI73 481 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 ERICH6Q7L0X2 663 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 DDX17Q92841 729 aaKnown RBP6.57□□□□□ -1.36
NUP54-206ENST00000508465 CCDC120Q96HB5 630 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 SIN3AQ96ST3 1273 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 FOXQ1Q9C009 403 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 PRDM5Q9NQX1 630 aaPredicted RBP6.57□□□□□ -1.36
NUP54-206ENST00000508465 PIK3R4Q99570 1358 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 ROBO2Q9HCK4 1378 aa6.57□□□□□ -1.36
NUP54-206ENST00000508465 PITPNM2Q9BZ72 1349 aa6.56□□□□□ -1.36
NUP54-206ENST00000508465 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms