RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 BTBD7Q9P203 1132 aa15.67■□□□□ 0.1
HMGCS1-205ENST00000508319 USP17L12C9JPN9 530 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 USP17L21D6R901 530 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 RGS2P41220 211 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 MNX1P50219 401 aaPredicted RBP15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 FXR1P51114 621 aaKnown RBP eCLIP15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 CCNA1P78396 465 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 CCL14Q16627 93 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 ZSCAN25Q6NSZ9 544 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 C16orf86Q6ZW13 317 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 ANKLE1Q8NAG6 615 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 PAWRQ96IZ0 340 aaKnown RBP15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 SLC4A4Q9Y6R1 1079 aa15.66■□□□□ 0.1
HMGCS1-205ENST00000508319 CDK8P49336 464 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 ICA1Q05084 483 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 MAP2K5Q13163 448 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 CHRDL2Q6WN34 429 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 NECAB2Q7Z6G3 386 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 SIAH1Q8IUQ4 282 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 TRMT44Q8IYL2 757 aaKnown RBP15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 KBTBD3Q8NAB2 608 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 TANGO6Q9C0B7 1094 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 PCDH10Q9P2E7 1040 aa15.65■□□□□ 0.1
HMGCS1-205ENST00000508319 COL11A1P12107 1806 aaPredicted RBP15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 CACNB2Q08289 660 aaPredicted RBP15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 GRB14Q14449 540 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 CTR9Q6PD62 1173 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 AMOTL1Q8IY63 956 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 LPAR1Q92633 364 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 GPATCH3Q96I76 525 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 STRBPQ96SI9 672 aaKnown RBP15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 PRO3102Q9H379 93 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 ARHGEF10LQ9HCE6 1279 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 CWC22Q9HCG8 908 aaKnown RBP15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 OGDHLQ9ULD0 1010 aa15.64■□□□□ 0.09
HMGCS1-205ENST00000508319 SLC15A5A6NIM6 579 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 EVI5O60447 810 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 PTPREP23469 700 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 COG2Q14746 738 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 WDR78Q5VTH9 848 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 SPICE1Q8N0Z3 855 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 OSBP2Q969R2 916 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 DDRGK1Q96HY6 314 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 CCDC17Q96LX7 622 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 VCPKMTQ9H867 229 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 FLRT1Q9NZU1 646 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 RBM27Q9P2N5 1060 aaKnown RBP15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 ARPP21Q9UBL0 812 aaPredicted RBP15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 TMX2Q9Y320 296 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 PCDHB15Q9Y5E8 787 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 NR2E3Q9Y5X4 410 aa15.63■□□□□ 0.09
HMGCS1-205ENST00000508319 ROBO3Q96MS0 1386 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 GLRX3O76003 335 aaKnown RBP15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 HOXC6P09630 235 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 CCND3P30281 292 aaPredicted RBP15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 APPBP2Q92624 585 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 MOV10L1Q9BXT6 1211 aaKnown RBP15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 SH2D4AQ9H788 454 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 EPB41L4AQ9HCS5 686 aaPredicted RBP15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 IVNS1ABPQ9Y6Y0 642 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 DNAH12Q6ZR08 3092 aa15.62■□□□□ 0.09
HMGCS1-205ENST00000508319 GSG1L2A8MUP6 293 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 SBK1Q52WX2 424 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 LHX8Q68G74 356 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 MB21D1Q8N884 522 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 ATG4CQ96DT6 458 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 NBPF3Q9H094 633 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 SPATC1LQ9H0A9 340 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 HOXC10Q9NYD6 342 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 PFASO15067 1338 aa15.61■□□□□ 0.09
HMGCS1-205ENST00000508319 WDR46O15213 610 aaKnown RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 RNF113AO15541 343 aaKnown RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 GPAA1O43292 621 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 FLOT1O75955 427 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 IGHA2P01877 340 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 ZFYP08048 801 aaPredicted RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 EEF2P13639 858 aaKnown RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 DSG3P32926 999 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 RRP1P56182 461 aaKnown RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 GIMAP6Q6P9H5 292 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 SHCBP1Q8NEM2 672 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 NPLOC4Q8TAT6 608 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 PI4K2BQ8TCG2 481 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 OTUD7AQ8TE49 926 aaPredicted RBP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 C11orf49Q9H6J7 331 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 KANSL2Q9H9L4 492 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 TTC41PQ6P2S7 1318 aa15.6■□□□□ 0.09
HMGCS1-205ENST00000508319 MYH4Q9Y623 1939 aa15.59■□□□□ 0.09
HMGCS1-205ENST00000508319 M0R2C6 588 aa15.59■□□□□ 0.09
HMGCS1-205ENST00000508319 ERCC3P19447 782 aa15.59■□□□□ 0.09
HMGCS1-205ENST00000508319 ADORA2AP29274 412 aa15.59■□□□□ 0.09
HMGCS1-205ENST00000508319 MFSD14CQ5VZR4 134 aa15.59■□□□□ 0.09
HMGCS1-205ENST00000508319 COL6A1P12109 1028 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 RASA1P20936 1047 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 ATP2B2Q01814 1243 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 C7orf61Q8IZ16 206 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 FBXO28Q9NVF7 368 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 SALL3Q9BXA9 1300 aa15.58■□□□□ 0.08
HMGCS1-205ENST00000508319 ZNFX1Q9P2E3 1918 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms