RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 DNM1LO00429 736 aa25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 MNX1P50219 401 aaPredicted RBP25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 LRCH3Q96II8 777 aa25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 SENP6Q9GZR1 1112 aaPredicted RBP25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 MYH8P13535 1937 aa25.37■■□□□ 1.65
SQSTM1-210ENST00000506042 OLFML2BQ68BL8 750 aa25.36■■□□□ 1.65
SQSTM1-210ENST00000506042 DEFB123Q8N688 67 aa25.36■■□□□ 1.65
SQSTM1-210ENST00000506042 ZBED9Q6R2W3 1325 aa25.36■■□□□ 1.65
SQSTM1-210ENST00000506042 APBB1O00213 710 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 CNMDO75829 334 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 GABPAQ06546 454 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 PLS1Q14651 629 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 ABRAQ8N0Z2 381 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 SPATC1LQ9H0A9 340 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 DCP1AQ9NPI6 582 aaPredicted RBP25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 PAG1Q9NWQ8 432 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 BTBD7Q9P203 1132 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 ZNF236Q9UL36 1845 aa25.35■■□□□ 1.65
SQSTM1-210ENST00000506042 SOX1O00570 391 aaPredicted RBP25.34■■□□□ 1.65
SQSTM1-210ENST00000506042 ICA1Q05084 483 aa25.34■■□□□ 1.65
SQSTM1-210ENST00000506042 PANK1Q8TE04 598 aa25.34■■□□□ 1.65
SQSTM1-210ENST00000506042 FRMPD3Q5JV73 1810 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 FLOT1O75955 427 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 SLC25A27O95847 323 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 ADORA2AP29274 412 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 COPB2P35606 906 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 LRRC26Q2I0M4 334 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 BCL11AQ9H165 835 aa25.33■■□□□ 1.65
SQSTM1-210ENST00000506042 WDR46O15213 610 aaKnown RBP25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 FCER1AP12319 257 aa25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 NCAPG2Q86XI2 1143 aa25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 SDR42E1Q8WUS8 393 aa25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 MOV10L1Q9BXT6 1211 aaKnown RBP25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 GOPCQ9HD26 462 aa25.32■■□□□ 1.64
SQSTM1-210ENST00000506042 CYP2C19P33261 490 aa25.31■■□□□ 1.64
SQSTM1-210ENST00000506042 SEPT4O43236 478 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 ERCC3P19447 782 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 DSG3P32926 999 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 MDM2Q00987 491 aaPredicted RBP25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 LCORLQ8N3X6 602 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 VCPKMTQ9H867 229 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 STXBP5LQ9Y2K9 1186 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 TMX2Q9Y320 296 aa25.3■■□□□ 1.64
SQSTM1-210ENST00000506042 DLL1O00548 723 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 MBD4O95243 580 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 CYBAP13498 195 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 ATP5JP18859 108 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 GUCY1A2P33402 732 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 NPLOC4Q8TAT6 608 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 ARMT1Q9H993 441 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 KANSL2Q9H9L4 492 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 FLRT1Q9NZU1 646 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 NRBP1Q9UHY1 535 aa25.29■■□□□ 1.64
SQSTM1-210ENST00000506042 ADD2P35612 726 aa25.28■■□□□ 1.64
SQSTM1-210ENST00000506042 GPATCH3Q96I76 525 aa25.28■■□□□ 1.64
SQSTM1-210ENST00000506042 TCRBV5S4A2TA0A5A2 114 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 MYCNP04198 464 aaPredicted RBP25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 KCTD2Q14681 263 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 UBE3CQ15386 1083 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 POTEEQ6S8J3 1075 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 SAMD1Q6SPF0 538 aaPredicted RBP25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 BOLA2Q9H3K6 86 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 ZNF287Q9HBT7 754 aa25.27■■□□□ 1.64
SQSTM1-210ENST00000506042 A0A1W2PRG0 241 aa25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 ATN1P54259 1190 aaPredicted RBP25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 RTP1P59025 263 aa25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 LRRFIP1Q32MZ4 808 aaKnown RBP25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 HAUS7Q99871 368 aa25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 ARPP21Q9UBL0 812 aaPredicted RBP25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 ATP11BQ9Y2G3 1177 aa25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 A0A0G2JMZ2 1700 aa25.26■■□□□ 1.63
SQSTM1-210ENST00000506042 RAD21O60216 631 aa25.25■■□□□ 1.63
SQSTM1-210ENST00000506042 C12orf60Q5U649 245 aa25.25■■□□□ 1.63
SQSTM1-210ENST00000506042 LRRCC1Q9C099 1032 aa25.25■■□□□ 1.63
SQSTM1-210ENST00000506042 CTDP1Q9Y5B0 961 aaPredicted RBP25.25■■□□□ 1.63
SQSTM1-210ENST00000506042 SLC4A4Q9Y6R1 1079 aa25.25■■□□□ 1.63
SQSTM1-210ENST00000506042 RARBP10826 455 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 CDK8P49336 464 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 FAM109BQ6ICB4 259 aaPredicted RBP25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 C16orf86Q6ZW13 317 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 SPICE1Q8N0Z3 855 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 MMP19Q99542 508 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 ZBTB40Q9NUA8 1239 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 COG6Q9Y2V7 657 aa25.24■■□□□ 1.63
SQSTM1-210ENST00000506042 USP17L12C9JPN9 530 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 USP17L21D6R901 530 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 AKR1B1P15121 316 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 GJC2Q5T442 439 aaPredicted RBP25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 DIEXFQ68CQ4 756 aaKnown RBP25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 RNF180Q86T96 592 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 SLC44A5Q8NCS7 719 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 ATG4CQ96DT6 458 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 DYNLL2Q96FJ2 89 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 MTMR10Q9NXD2 777 aa25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 DIS3Q9Y2L1 958 aaKnown RBP25.23■■□□□ 1.63
SQSTM1-210ENST00000506042 MYH7P12883 1935 aa25.22■■□□□ 1.63
SQSTM1-210ENST00000506042 ZNF697Q5TEC3 545 aa25.22■■□□□ 1.63
SQSTM1-210ENST00000506042 MAML3Q96JK9 1138 aa25.22■■□□□ 1.63
SQSTM1-210ENST00000506042 PRDM5Q9NQX1 630 aaPredicted RBP25.22■■□□□ 1.63
SQSTM1-210ENST00000506042 CNPY2Q9Y2B0 182 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms