RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 NYXQ9GZU5 481 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 BRMS1Q9HCU9 246 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 IRS2Q9Y4H2 1338 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 CD44P16070 742 aaKnown RBP11.24□□□□□ -0.61
CLIP1-204ENST00000501271 CCDC93Q567U6 631 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 TRIM65Q6PJ69 517 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 HOMER1Q86YM7 354 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 REXO1L1PQ8IX06 675 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 FERMT2Q96AC1 680 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 ATP8A2Q9NTI2 1148 aa11.24□□□□□ -0.61
CLIP1-204ENST00000501271 ARPP21Q9UBL0 812 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-204ENST00000501271 VWA3AA6NCI4 1184 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 RGL2O15211 777 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 CCP110O43303 1012 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 SCG2P13521 617 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ERCC5P28715 1186 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ETF1P62495 437 aaKnown RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ATP2C1P98194 919 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 DPYDQ12882 1025 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 PTGDRQ13258 359 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 SPECC1LQ69YQ0 1117 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 RCSD1Q6JBY9 416 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 TC2NQ8N9U0 490 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ANKRD2Q9GZV1 360 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 NAV1Q8NEY1 1877 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 TAF1LQ8IZX4 1826 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 TSPY2A6NKD2 308 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 GNPATO15228 680 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ARHGAP6O43182 974 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 BMP15O95972 392 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 TM4SF1P30408 202 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 ADKP55263 362 aaKnown RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 CUL4BQ13620 913 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 KMT5BQ4FZB7 885 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 SBK1Q52WX2 424 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 PIK3AP1Q6ZUJ8 805 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 APTXQ7Z2E3 356 aaKnown RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 SMYD4Q8IYR2 804 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-204ENST00000501271 DNAI1Q9UI46 699 aa11.23□□□□□ -0.61
CLIP1-204ENST00000501271 PHLPP2Q6ZVD8 1323 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 SYNRGQ9UMZ2 1314 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 RPS6KA4O75676 772 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 STX17P56962 302 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 NR1I3Q14994 352 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 PFKFB3Q16875 520 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-204ENST00000501271 KLHL10Q6JEL2 608 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 FBXO38Q6PIJ6 1188 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 FCHSD1Q86WN1 690 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 STAMQ92783 540 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 FEZ1Q99689 392 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 BAG1Q99933 345 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-204ENST00000501271 MCM9Q9NXL9 1143 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 XDHP47989 1333 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 CDK5RAP2Q96SN8 1893 aa11.22□□□□□ -0.61
CLIP1-204ENST00000501271 A0A1B0GTH6 734 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 ZPR1O75312 459 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 TUBB4AP04350 444 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 NLRP5P59047 1200 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 IL17AQ16552 155 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 DZIP1Q86YF9 867 aaKnown RBP11.21□□□□□ -0.61
CLIP1-204ENST00000501271 ZNF397Q8NF99 534 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-204ENST00000501271 PPP2R2CQ9Y2T4 447 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 TEX33O43247 280 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 E2F4Q16254 413 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 RC3H1Q5TC82 1133 aaKnown RBP11.21□□□□□ -0.61
CLIP1-204ENST00000501271 TOGARAM2Q6ZUX3 1019 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 CCDC34Q96HJ3 373 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 IL17RBQ9NRM6 502 aa11.21□□□□□ -0.61
CLIP1-204ENST00000501271 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLIP1-204ENST00000501271 FAM205AQ6ZU69 1335 aa11.21□□□□□ -0.62
CLIP1-204ENST00000501271 NHSQ6T4R5 1651 aa11.21□□□□□ -0.62
CLIP1-204ENST00000501271 PPP1R3GB7ZBB8 358 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 NPHP1O15259 732 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 ZSCAN20P17040 1043 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-204ENST00000501271 MCM7P33993 719 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 ERCC6LQ2NKX8 1250 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 SPATA1Q5VX52 437 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 TPTE2Q6XPS3 522 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 DYNLL2Q96FJ2 89 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 GSDMAQ96QA5 445 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 MKRN1Q9UHC7 482 aaKnown RBP11.2□□□□□ -0.62
CLIP1-204ENST00000501271 DDX41Q9UJV9 622 aaKnown RBP11.2□□□□□ -0.62
CLIP1-204ENST00000501271 MYH8P13535 1937 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 ZSCAN12O43309 604 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 STX10O60499 249 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 TRAPPC10P48553 1259 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 TFAP4Q01664 338 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 C12orf60Q5U649 245 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 CDKAL1Q5VV42 579 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 PDXDC2PQ6P474 469 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 CNKSR2Q8WXI2 1034 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 GPKOWQ92917 476 aaPredicted RBP eCLIP11.2□□□□□ -0.62
CLIP1-204ENST00000501271 MTRQ99707 1265 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 BLZF1Q9H2G9 400 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 OGFRQ9NZT2 677 aa11.2□□□□□ -0.62
CLIP1-204ENST00000501271 PIP4K2BP78356 416 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 GRIK5Q16478 980 aa11.19□□□□□ -0.62
CLIP1-204ENST00000501271 CT47A1Q5JQC4 288 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-204ENST00000501271 FAM177A1Q8N128 213 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms